Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 NDUFS5P3-201ENST00000450668 321 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 NPM1P13-201ENST00000452663 865 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 MRPL42P4-201ENST00000453267 443 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 SNORD11.1-201ENST00000459482 85 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 RPS26P28-201ENST00000470806 348 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC069528.1-202ENST00000482888 637 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC134050.1-201ENST00000495088 933 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 RPL30P11-201ENST00000495304 339 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 OR10V3P-201ENST00000525712 725 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 OR8K4P-201ENST00000534608 872 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC074029.1-201ENST00000552531 1044 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 HNRNPCP4-201ENST00000571636 900 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 BNIP3P38-201ENST00000601117 544 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC106052.1-201ENST00000608029 497 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AP000255.1-201ENST00000610276 676 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC105227.2-201ENST00000615075 605 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AL157770.1-201ENST00000623049 439 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AL078595.3-201ENST00000623815 1166 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC067931.1-201ENST00000624190 671 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 GMFB-210ENST00000628554 639 ntTSL 4 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 AC087821.2-201ENST00000637086 450 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 MFSD8-245ENST00000641743 948 ntBASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
CCDC3Q9BQI4 XPOTP1-201ENST00000443317 2398 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC3Q9BQI4 SAGE4P-201ENST00000442271 3381 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC3Q9BQI4 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC3Q9BQI4 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL121834.1-202ENST00000404494 277 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL136310.1-201ENST00000404926 654 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 HSPE1P12-201ENST00000412576 301 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 MTCO2P17-201ENST00000424336 677 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 C1DP1-201ENST00000426049 402 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL691449.1-201ENST00000426570 421 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 USP12PY-201ENST00000427677 1064 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL035246.1-201ENST00000433554 1255 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 HMGB1P48-201ENST00000446155 598 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 VN1R34P-201ENST00000447387 883 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL589880.1-201ENST00000448271 287 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL009048.1-201ENST00000450437 298 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 FTH1P24-201ENST00000503502 462 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AC023632.1-201ENST00000518463 375 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 DEFB109D-201ENST00000529497 240 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 OR4U1P-201ENST00000554958 912 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 HSPE1P5-201ENST00000561489 272 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AC120057.2-201ENST00000571520 271 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 MIR5685-201ENST00000579080 79 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AC091488.1-201ENST00000604239 660 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL583856.2-201ENST00000606298 543 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL157392.4-201ENST00000609756 345 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 5S_rRNA.16-201ENST00000612928 119 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 MIR7151-201ENST00000617477 60 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 AC112200.1-201ENST00000625015 234 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
CCDC3Q9BQI4 MIR6715B-201ENST00000637172 77 ntBASIC4□□□□□ -1.77
CCDC3Q9BQI4 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms