Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC005005.2-201ENST00000420779 380 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC004448.2-201ENST00000422360 586 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 RPP40P1-201ENST00000426762 456 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 HIGD1AP4-201ENST00000430194 280 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC105402.2-201ENST00000438503 358 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 MRPL48P1-201ENST00000445390 636 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 SCARNA10-201ENST00000459255 330 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AL132838.2-201ENST00000492041 314 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 DUXAP5-201ENST00000529668 529 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AP000619.3-201ENST00000535634 1127 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC087465.1-201ENST00000560574 245 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 EIF5A2P1-201ENST00000564027 460 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 Z99129.2-201ENST00000619967 314 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC018816.2-201ENST00000621460 353 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC140113.4-201ENST00000622087 222 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC068620.4-201ENST00000636730 1182 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 MKKS-204ENST00000639674 192 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC011978.2-201ENST00000569835 2054 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 ERCC6-202ENST00000374127 1782 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 MIR195-201ENST00000385194 87 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 SNORD96B-201ENST00000386148 79 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 DSTNP4-201ENST00000399472 474 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 RNA5SP80-201ENST00000410475 111 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 TMSB10P2-201ENST00000416049 131 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 VPS26BP1-201ENST00000417155 755 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AL645608.4-201ENST00000423619 154 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC010099.3-201ENST00000423896 409 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 CKS1BP6-201ENST00000424932 240 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 UBE2V1P1-201ENST00000430836 445 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 YWHAZP8-201ENST00000436935 731 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC004938.1-201ENST00000438468 308 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 RPL21P134-201ENST00000453468 483 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 RPL23AP2-201ENST00000471227 466 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC005351.1-201ENST00000511152 786 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 HMGB3P13-201ENST00000511263 607 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 FABP5P12-201ENST00000515543 389 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 SNORA74D-201ENST00000516404 141 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 RN7SKP82-201ENST00000516786 223 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC027309.2-201ENST00000520566 192 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 MTATP6P15-201ENST00000527233 835 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AP001189.2-201ENST00000527320 189 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC023538.1-201ENST00000534576 736 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 GTF2IP8-201ENST00000560687 584 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC074051.3-201ENST00000570238 358 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 HNRNPCP4-201ENST00000571636 900 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 NIFKP6-201ENST00000598115 845 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC231759.1-201ENST00000616455 597 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC073348.1-201ENST00000623002 331 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 U3.53-201ENST00000628922 216 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC097655.1-201ENST00000635075 318 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 MIR1322-201ENST00000638013 71 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 148.9 ms