Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 OR5T3-201ENST00000303059 1023 ntBASIC3.25□□□□□ -1.89
USF1P22415 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.25□□□□□ -1.89
USF1P22415 SNORD6-201ENST00000365444 73 ntBASIC3.25□□□□□ -1.89
USF1P22415 RNU6-356P-201ENST00000384140 107 ntBASIC3.25□□□□□ -1.89
USF1P22415 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
USF1P22415 DNAJC19P6-201ENST00000401853 280 ntBASIC3.25□□□□□ -1.89
USF1P22415 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.25□□□□□ -1.89
USF1P22415 AL353692.2-201ENST00000407054 335 ntBASIC3.25□□□□□ -1.89
USF1P22415 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.25□□□□□ -1.89
USF1P22415 AC011742.1-201ENST00000431448 434 ntBASIC3.25□□□□□ -1.89
USF1P22415 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.25□□□□□ -1.89
USF1P22415 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.25□□□□□ -1.89
USF1P22415 HMGB1P48-201ENST00000446155 598 ntBASIC3.25□□□□□ -1.89
USF1P22415 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.25□□□□□ -1.89
USF1P22415 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.25□□□□□ -1.89
USF1P22415 RPL23AP23-201ENST00000452590 471 ntBASIC3.25□□□□□ -1.89
USF1P22415 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC3.25□□□□□ -1.89
USF1P22415 AP000873.1-201ENST00000463987 400 ntBASIC3.25□□□□□ -1.89
USF1P22415 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.25□□□□□ -1.89
USF1P22415 RNA5SP164-201ENST00000516533 110 ntBASIC3.25□□□□□ -1.89
USF1P22415 RNU6-352P-201ENST00000516908 107 ntBASIC3.25□□□□□ -1.89
USF1P22415 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.25□□□□□ -1.89
USF1P22415 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.25□□□□□ -1.89
USF1P22415 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.25□□□□□ -1.89
USF1P22415 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC3.25□□□□□ -1.89
USF1P22415 CKS1BP1-201ENST00000555221 240 ntBASIC3.25□□□□□ -1.89
USF1P22415 CENPUP2-201ENST00000555897 1186 ntBASIC3.25□□□□□ -1.89
USF1P22415 AC104307.1-201ENST00000616142 196 ntBASIC3.25□□□□□ -1.89
USF1P22415 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC3.25□□□□□ -1.89
USF1P22415 AC006065.5-201ENST00000623427 349 ntBASIC3.25□□□□□ -1.89
USF1P22415 AC124312.6-202ENST00000623624 418 ntBASIC3.25□□□□□ -1.89
USF1P22415 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.25□□□□□ -1.89
USF1P22415 AC083865.1-201ENST00000636634 831 ntBASIC3.25□□□□□ -1.89
USF1P22415 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.25□□□□□ -1.89
USF1P22415 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.25□□□□□ -1.89
USF1P22415 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
USF1P22415 HSPA8P1-201ENST00000425843 1833 ntBASIC3.25□□□□□ -1.89
USF1P22415 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.25□□□□□ -1.89
USF1P22415 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
USF1P22415 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USF1P22415 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USF1P22415 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USF1P22415 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USF1P22415 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USF1P22415 RNU6-525P-201ENST00000363685 104 ntBASIC3.24□□□□□ -1.89
USF1P22415 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.24□□□□□ -1.89
USF1P22415 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USF1P22415 RPL17P50-201ENST00000396131 546 ntBASIC3.24□□□□□ -1.89
USF1P22415 RNU2-21P-201ENST00000410368 188 ntBASIC3.24□□□□□ -1.89
USF1P22415 RPS3AP25-201ENST00000411660 793 ntBASIC3.24□□□□□ -1.89
USF1P22415 RHEBP3-201ENST00000411920 351 ntBASIC3.24□□□□□ -1.89
USF1P22415 RPS29P4-201ENST00000414733 161 ntBASIC3.24□□□□□ -1.89
USF1P22415 NUP35P2-201ENST00000416748 943 ntBASIC3.24□□□□□ -1.89
USF1P22415 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.24□□□□□ -1.89
USF1P22415 AL035423.1-201ENST00000420331 213 ntBASIC3.24□□□□□ -1.89
USF1P22415 USP12PY-201ENST00000427677 1064 ntBASIC3.24□□□□□ -1.89
USF1P22415 MTND4LP7-201ENST00000431728 294 ntBASIC3.24□□□□□ -1.89
USF1P22415 RPS26P40-201ENST00000435209 294 ntBASIC3.24□□□□□ -1.89
USF1P22415 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USF1P22415 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC3.24□□□□□ -1.89
USF1P22415 CFTRP1-201ENST00000456646 183 ntBASIC3.24□□□□□ -1.89
USF1P22415 AL136097.1-201ENST00000456945 913 ntBASIC3.24□□□□□ -1.89
USF1P22415 CEACAMP4-201ENST00000457676 421 ntBASIC3.24□□□□□ -1.89
USF1P22415 HMGB3P30-201ENST00000457863 606 ntBASIC3.24□□□□□ -1.89
USF1P22415 snoU13.24-201ENST00000458998 104 ntBASIC3.24□□□□□ -1.89
USF1P22415 AC146507.1-201ENST00000468335 354 ntBASIC3.24□□□□□ -1.89
USF1P22415 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.24□□□□□ -1.89
USF1P22415 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.24□□□□□ -1.89
USF1P22415 UBE2CP3-201ENST00000502715 450 ntBASIC3.24□□□□□ -1.89
USF1P22415 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.24□□□□□ -1.89
USF1P22415 AC010342.1-201ENST00000514047 877 ntBASIC3.24□□□□□ -1.89
USF1P22415 IGKV2-23-201ENST00000518729 323 ntBASIC3.24□□□□□ -1.89
USF1P22415 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.24□□□□□ -1.89
USF1P22415 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.24□□□□□ -1.89
USF1P22415 IGKV2D-19-201ENST00000523346 262 ntBASIC3.24□□□□□ -1.89
USF1P22415 MTND1P6-201ENST00000523621 946 ntBASIC3.24□□□□□ -1.89
USF1P22415 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.24□□□□□ -1.89
USF1P22415 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.24□□□□□ -1.89
USF1P22415 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.24□□□□□ -1.89
USF1P22415 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.24□□□□□ -1.89
USF1P22415 AC233266.2-201ENST00000567067 528 ntBASIC3.24□□□□□ -1.89
USF1P22415 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.24□□□□□ -1.89
USF1P22415 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.24□□□□□ -1.89
USF1P22415 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC3.24□□□□□ -1.89
USF1P22415 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
USF1P22415 AC135178.6-201ENST00000605314 398 ntBASIC3.24□□□□□ -1.89
USF1P22415 AL356490.1-201ENST00000623079 479 ntBASIC3.24□□□□□ -1.89
USF1P22415 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.24□□□□□ -1.89
USF1P22415 FAM157B-203ENST00000639350 358 ntBASIC3.24□□□□□ -1.89
USF1P22415 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USF1P22415 XPOTP1-201ENST00000443317 2398 ntBASIC3.24□□□□□ -1.89
USF1P22415 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.24□□□□□ -1.89
USF1P22415 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.24□□□□□ -1.89
USF1P22415 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USF1P22415 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.24□□□□□ -1.89
USF1P22415 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USF1P22415 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
USF1P22415 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USF1P22415 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
USF1P22415 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms