Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
VPS13AQ96RL7 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC3.06□□□□□ -1.92
VPS13AQ96RL7 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.06□□□□□ -1.92
VPS13AQ96RL7 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VPS13AQ96RL7 ISCA1P6-201ENST00000427740 390 ntBASIC3.06□□□□□ -1.92
VPS13AQ96RL7 ARL6IP1P2-201ENST00000431356 563 ntBASIC3.06□□□□□ -1.92
VPS13AQ96RL7 HLA-N-201ENST00000437516 135 ntBASIC3.06□□□□□ -1.92
VPS13AQ96RL7 AC006518.1-201ENST00000541449 943 ntBASIC3.06□□□□□ -1.92
VPS13AQ96RL7 ATP5F1P7-201ENST00000567330 760 ntBASIC3.06□□□□□ -1.92
VPS13AQ96RL7 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS13AQ96RL7 AC098826.3-201ENST00000603823 466 ntBASIC3.06□□□□□ -1.92
VPS13AQ96RL7 LSM1P2-201ENST00000604911 322 ntBASIC3.06□□□□□ -1.92
VPS13AQ96RL7 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS13AQ96RL7 IPO8P1-201ENST00000455509 3109 ntBASIC3.06□□□□□ -1.92
VPS13AQ96RL7 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 RPSAP41-201ENST00000439695 860 ntBASIC3.05□□□□□ -1.92
VPS13AQ96RL7 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 RNA5SP52-201ENST00000362448 134 ntBASIC3.05□□□□□ -1.92
VPS13AQ96RL7 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.05□□□□□ -1.92
VPS13AQ96RL7 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 AL139415.2-201ENST00000431968 163 ntBASIC3.05□□□□□ -1.92
VPS13AQ96RL7 AC114967.1-201ENST00000504890 259 ntBASIC3.05□□□□□ -1.92
VPS13AQ96RL7 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 RN7SKP116-201ENST00000516902 319 ntBASIC3.05□□□□□ -1.92
VPS13AQ96RL7 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 EEF1A1P37-201ENST00000522748 715 ntBASIC3.05□□□□□ -1.92
VPS13AQ96RL7 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS13AQ96RL7 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 AL031736.2-201ENST00000426573 787 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 HMGB3P22-202ENST00000451823 572 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 RPL23AP67-201ENST00000465341 474 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 EIF1P6-201ENST00000600054 334 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 AC022509.4-201ENST00000621404 572 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 GNG5P5-201ENST00000420444 220 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 EIF4EP1-201ENST00000422311 642 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 AC017037.1-201ENST00000508460 471 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 COX6CP8-201ENST00000522620 226 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 AADACP1-206ENST00000561502 1193 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 AC024153.1-201ENST00000603103 365 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 RNU1-108P-201ENST00000362556 161 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 HDGFP1-201ENST00000405943 252 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 RNA5SP24-201ENST00000516478 95 ntBASIC3.04□□□□□ -1.92
VPS13AQ96RL7 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS13AQ96RL7 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC3.03□□□□□ -1.92
VPS13AQ96RL7 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.03□□□□□ -1.92
VPS13AQ96RL7 AC018529.3-201ENST00000624212 2254 ntBASIC3.03□□□□□ -1.92
VPS13AQ96RL7 MIR196B-201ENST00000384852 84 ntBASIC3.03□□□□□ -1.92
VPS13AQ96RL7 HLFP1-201ENST00000402375 499 ntBASIC3.03□□□□□ -1.92
VPS13AQ96RL7 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS13AQ96RL7 ETF1P3-201ENST00000430422 1160 ntBASIC3.03□□□□□ -1.92
VPS13AQ96RL7 RPS24P13-201ENST00000442520 397 ntBASIC3.03□□□□□ -1.92
VPS13AQ96RL7 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS13AQ96RL7 ARL4AP1-201ENST00000503220 705 ntBASIC3.03□□□□□ -1.92
VPS13AQ96RL7 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.03□□□□□ -1.92
VPS13AQ96RL7 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.03□□□□□ -1.92
VPS13AQ96RL7 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS13AQ96RL7 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS13AQ96RL7 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS13AQ96RL7 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS13AQ96RL7 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms