Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL6A3P12111 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.27□□□□□ -1.89
COL6A3P12111 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
COL6A3P12111 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC3.27□□□□□ -1.89
COL6A3P12111 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.27□□□□□ -1.89
COL6A3P12111 RPS4XP7-201ENST00000406274 780 ntBASIC3.27□□□□□ -1.89
COL6A3P12111 RN7SKP192-201ENST00000411291 327 ntBASIC3.27□□□□□ -1.89
COL6A3P12111 FAM103A2P-201ENST00000444122 354 ntBASIC3.27□□□□□ -1.89
COL6A3P12111 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL6A3P12111 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC3.27□□□□□ -1.89
COL6A3P12111 AP002770.2-201ENST00000543613 532 ntBASIC3.27□□□□□ -1.89
COL6A3P12111 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.27□□□□□ -1.89
COL6A3P12111 MIR622-201ENST00000638396 96 ntBASIC3.27□□□□□ -1.89
COL6A3P12111 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC3.27□□□□□ -1.89
COL6A3P12111 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.27□□□□□ -1.89
COL6A3P12111 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
COL6A3P12111 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL6A3P12111 OR5BR1P-201ENST00000524992 1330 ntBASIC3.27□□□□□ -1.89
COL6A3P12111 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
COL6A3P12111 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL6A3P12111 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC3.26□□□□□ -1.89
COL6A3P12111 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.26□□□□□ -1.89
COL6A3P12111 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.26□□□□□ -1.89
COL6A3P12111 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.26□□□□□ -1.89
COL6A3P12111 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.26□□□□□ -1.89
COL6A3P12111 IGLV3-26-201ENST00000520756 302 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.26□□□□□ -1.89
COL6A3P12111 AL157817.1-201ENST00000614264 790 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC3.26□□□□□ -1.89
COL6A3P12111 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC3.26□□□□□ -1.89
COL6A3P12111 AC139713.2-215ENST00000641428 5037 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL6A3P12111 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL6A3P12111 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.26□□□□□ -1.89
COL6A3P12111 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC3.26□□□□□ -1.89
COL6A3P12111 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.26□□□□□ -1.89
COL6A3P12111 AC021146.3-201ENST00000511911 260 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC3.26□□□□□ -1.89
COL6A3P12111 MAPK10-362ENST00000641864 4484 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL6A3P12111 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.26□□□□□ -1.89
COL6A3P12111 MIR22-201ENST00000362190 85 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 RNU6-851P-201ENST00000384565 107 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 MTND4P22-201ENST00000413116 1169 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 AL591623.2-201ENST00000449978 222 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 AC084357.1-201ENST00000473404 255 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC3.26□□□□□ -1.89
COL6A3P12111 APOOP4-201ENST00000513530 597 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 AL442163.2-201ENST00000553912 710 ntBASIC3.26□□□□□ -1.89
COL6A3P12111 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.26□□□□□ -1.89
COL6A3P12111 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC3.26□□□□□ -1.89
COL6A3P12111 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL6A3P12111 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL6A3P12111 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL6A3P12111 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.25□□□□□ -1.89
COL6A3P12111 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
COL6A3P12111 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL6A3P12111 MIR181A2-201ENST00000384863 110 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 VDAC2P1-201ENST00000399358 958 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.25□□□□□ -1.89
COL6A3P12111 AP000936.2-201ENST00000447151 681 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 AP006245.1-201ENST00000522549 120 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.25□□□□□ -1.89
COL6A3P12111 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
COL6A3P12111 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
COL6A3P12111 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
COL6A3P12111 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL6A3P12111 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.25□□□□□ -1.89
COL6A3P12111 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
COL6A3P12111 NMD3P1-201ENST00000439704 1488 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.25□□□□□ -1.89
COL6A3P12111 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL6A3P12111 RNA5SP42-201ENST00000364278 115 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 RNU2-52P-201ENST00000410680 190 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 AL645937.1-202ENST00000421799 937 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.25□□□□□ -1.89
COL6A3P12111 MTCO1P51-201ENST00000427672 1060 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.25□□□□□ -1.89
COL6A3P12111 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
COL6A3P12111 AC108729.3-201ENST00000513484 108 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 AC006518.1-201ENST00000541449 943 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 MIR4781-201ENST00000585250 76 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 AC128687.2-201ENST00000609657 566 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.25□□□□□ -1.89
COL6A3P12111 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL6A3P12111 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
COL6A3P12111 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL6A3P12111 AC017002.4-201ENST00000604721 1525 ntBASIC3.25□□□□□ -1.89
COL6A3P12111 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
COL6A3P12111 AL360182.1-201ENST00000397433 468 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 UQCRHP3-201ENST00000451503 251 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.24□□□□□ -1.89
COL6A3P12111 RPL23AP11-201ENST00000475260 469 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 AC113430.1-201ENST00000506872 718 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 Y_RNA.670-201ENST00000516255 105 ntBASIC3.24□□□□□ -1.89
COL6A3P12111 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL6A3P12111 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC3.24□□□□□ -1.89
COL6A3P12111 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
COL6A3P12111 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.24□□□□□ -1.89
COL6A3P12111 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms