Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 GEMIN8P3-201ENST00000445417 720 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RPS15AP1-201ENST00000457423 391 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC079804.1-201ENST00000461922 436 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RPL5P24-201ENST00000463742 885 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RPL7P49-201ENST00000471402 708 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RN7SL558P-201ENST00000497468 299 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC034244.1-201ENST00000507687 207 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC091868.1-201ENST00000508746 304 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RNU6-709P-201ENST00000517257 104 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AP003730.1-201ENST00000524605 285 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RN7SL652P-201ENST00000577769 300 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC022069.1-201ENST00000582910 658 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 GAS5-AS1-201ENST00000602767 694 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AL133338.2-201ENST00000604292 736 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC107075.1-201ENST00000613695 314 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 MIR6864-201ENST00000617935 70 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC022509.4-201ENST00000621404 572 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AL512506.2-201ENST00000624472 458 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 DCAF13P3-201ENST00000561147 1334 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 RNU6-582P-201ENST00000362989 107 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 SNORA71.2-201ENST00000364941 134 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC004022.2-201ENST00000413824 193 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 RPL21P43-201ENST00000425440 472 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 MTATP6P17-201ENST00000431030 672 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC011998.1-201ENST00000433403 117 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AL034418.1-201ENST00000448675 860 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 COX6CP18-201ENST00000448769 222 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 HMGN3P1-201ENST00000453847 193 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 RFC5P1-201ENST00000454419 874 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 NF1P3-201ENST00000457709 450 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC091564.1-201ENST00000464563 479 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AP000893.1-201ENST00000474462 794 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC109471.1-201ENST00000511631 612 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 RNU6-202P-201ENST00000515998 96 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 RNU6-885P-201ENST00000516607 104 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC087808.1-201ENST00000520501 361 ntBASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC4.41□□□□□ -1.7
COL28A1Q2UY09 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms