Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC1.99□□□□□ -2.09
APOBP04114 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC1.99□□□□□ -2.09
APOBP04114 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC1.99□□□□□ -2.09
APOBP04114 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC1.99□□□□□ -2.09
APOBP04114 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC1.99□□□□□ -2.09
APOBP04114 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC1.99□□□□□ -2.09
APOBP04114 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC1.99□□□□□ -2.09
APOBP04114 HIGD1AP1-201ENST00000550979 275 ntBASIC1.99□□□□□ -2.09
APOBP04114 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC1.99□□□□□ -2.09
APOBP04114 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC1.99□□□□□ -2.09
APOBP04114 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC1.99□□□□□ -2.09
APOBP04114 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
APOBP04114 AC116096.1-201ENST00000566804 2314 ntBASIC1.99□□□□□ -2.09
APOBP04114 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
APOBP04114 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC1.99□□□□□ -2.09
APOBP04114 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
APOBP04114 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC1.98□□□□□ -2.09
APOBP04114 SNORA70B-201ENST00000384210 135 ntBASIC1.98□□□□□ -2.09
APOBP04114 MIR504-201ENST00000385065 83 ntBASIC1.98□□□□□ -2.09
APOBP04114 HSD52-202ENST00000436225 772 ntTSL 3 BASIC1.98□□□□□ -2.09
APOBP04114 AC112653.1-201ENST00000443851 386 ntBASIC1.98□□□□□ -2.09
APOBP04114 AC010655.1-201ENST00000449336 292 ntBASIC1.98□□□□□ -2.09
APOBP04114 HMGB3P22-202ENST00000451823 572 ntBASIC1.98□□□□□ -2.09
APOBP04114 AL139174.1-201ENST00000531489 886 ntBASIC1.98□□□□□ -2.09
APOBP04114 AP002812.4-201ENST00000532139 286 ntBASIC1.98□□□□□ -2.09
APOBP04114 AC087888.1-201ENST00000550884 1254 ntBASIC1.98□□□□□ -2.09
APOBP04114 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC1.98□□□□□ -2.09
APOBP04114 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC1.98□□□□□ -2.09
APOBP04114 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 AL513302.2-201ENST00000562313 1842 ntBASIC1.98□□□□□ -2.09
APOBP04114 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
APOBP04114 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 MTCO1P8-201ENST00000416914 1523 ntBASIC1.98□□□□□ -2.09
APOBP04114 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC1.98□□□□□ -2.09
APOBP04114 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC1.98□□□□□ -2.09
APOBP04114 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC1.98□□□□□ -2.09
APOBP04114 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC1.98□□□□□ -2.09
APOBP04114 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC1.98□□□□□ -2.09
APOBP04114 snoU13.26-201ENST00000459452 105 ntBASIC1.98□□□□□ -2.09
APOBP04114 HMGB1P6-201ENST00000569046 646 ntBASIC1.98□□□□□ -2.09
APOBP04114 AC025754.2-201ENST00000606491 432 ntBASIC1.98□□□□□ -2.09
APOBP04114 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 SYF2-202ENST00000354361 926 ntTSL 2 BASIC1.98□□□□□ -2.09
APOBP04114 MIR22-201ENST00000362190 85 ntBASIC1.98□□□□□ -2.09
APOBP04114 AL360182.1-201ENST00000397433 468 ntBASIC1.98□□□□□ -2.09
APOBP04114 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC1.98□□□□□ -2.09
APOBP04114 KRTAP19-11P-201ENST00000439851 104 ntBASIC1.98□□□□□ -2.09
APOBP04114 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC1.98□□□□□ -2.09
APOBP04114 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC1.98□□□□□ -2.09
APOBP04114 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC1.98□□□□□ -2.09
APOBP04114 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC1.98□□□□□ -2.09
APOBP04114 AC024153.1-201ENST00000603103 365 ntBASIC1.98□□□□□ -2.09
APOBP04114 AC015849.2-201ENST00000605738 409 ntBASIC1.98□□□□□ -2.09
APOBP04114 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC1.98□□□□□ -2.09
APOBP04114 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 AL138820.1-201ENST00000617901 5305 ntBASIC1.98□□□□□ -2.09
APOBP04114 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC1.98□□□□□ -2.09
APOBP04114 AC092435.4-201ENST00000623012 4159 ntBASIC1.98□□□□□ -2.09
APOBP04114 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
APOBP04114 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC1.98□□□□□ -2.09
APOBP04114 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
APOBP04114 AC007563.3-201ENST00000433233 371 ntBASIC1.98□□□□□ -2.09
APOBP04114 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC1.98□□□□□ -2.09
APOBP04114 RNF148-202ENST00000447240 839 ntTSL 2 BASIC1.98□□□□□ -2.09
APOBP04114 HCG17-214ENST00000453558 732 ntTSL 5 BASIC1.98□□□□□ -2.09
APOBP04114 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC1.98□□□□□ -2.09
APOBP04114 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC1.98□□□□□ -2.09
APOBP04114 AL121766.1-201ENST00000547436 487 ntBASIC1.98□□□□□ -2.09
APOBP04114 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC1.98□□□□□ -2.09
APOBP04114 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC1.97□□□□□ -2.09
APOBP04114 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
APOBP04114 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
APOBP04114 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
APOBP04114 RSL24D1P4-201ENST00000400938 484 ntBASIC1.97□□□□□ -2.09
APOBP04114 AC012065.2-201ENST00000421295 375 ntBASIC1.97□□□□□ -2.09
APOBP04114 AC016696.1-201ENST00000446949 318 ntBASIC1.97□□□□□ -2.09
APOBP04114 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC1.97□□□□□ -2.09
APOBP04114 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC1.97□□□□□ -2.09
APOBP04114 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
APOBP04114 AL035413.2-201ENST00000604801 525 ntBASIC1.97□□□□□ -2.09
APOBP04114 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC1.97□□□□□ -2.09
APOBP04114 AC090971.4-201ENST00000560291 1800 ntBASIC1.97□□□□□ -2.09
APOBP04114 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
APOBP04114 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
APOBP04114 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC1.97□□□□□ -2.09
APOBP04114 MIR513A2-201ENST00000385249 127 ntBASIC1.97□□□□□ -2.09
APOBP04114 SRIP2-201ENST00000428470 166 ntBASIC1.97□□□□□ -2.09
APOBP04114 RPS12P18-201ENST00000442381 270 ntBASIC1.97□□□□□ -2.09
APOBP04114 AC069499.1-201ENST00000489433 509 ntBASIC1.97□□□□□ -2.09
APOBP04114 ATP5F1P5-201ENST00000526403 760 ntBASIC1.97□□□□□ -2.09
APOBP04114 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC1.97□□□□□ -2.09
APOBP04114 ELOCP29-201ENST00000588193 334 ntBASIC1.97□□□□□ -2.09
APOBP04114 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms