Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RPL31P15-201ENST00000449770 338 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AP006222.1-205ENST00000450734 457 ntBASIC5.46□□□□□ -1.54
RNF4P78317 PRPF38AP1-201ENST00000451976 933 ntBASIC5.46□□□□□ -1.54
RNF4P78317 TRBV26-201ENST00000456572 344 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AC011476.1-201ENST00000466725 307 ntBASIC5.46□□□□□ -1.54
RNF4P78317 SLC25A51P1-201ENST00000468432 871 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.46□□□□□ -1.54
RNF4P78317 AC093278.1-201ENST00000494700 600 ntBASIC5.46□□□□□ -1.54
RNF4P78317 NPM1P41-201ENST00000512920 831 ntBASIC5.46□□□□□ -1.54
RNF4P78317 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC5.46□□□□□ -1.54
RNF4P78317 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.46□□□□□ -1.54
RNF4P78317 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.46□□□□□ -1.54
RNF4P78317 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC5.46□□□□□ -1.54
RNF4P78317 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC5.46□□□□□ -1.54
RNF4P78317 AC022616.3-201ENST00000523940 148 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.46□□□□□ -1.54
RNF4P78317 TRIM51DP-201ENST00000529746 596 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AC037471.2-201ENST00000564941 598 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AL356432.3-201ENST00000568952 465 ntBASIC5.46□□□□□ -1.54
RNF4P78317 RPL26P30-202ENST00000602923 645 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AC115621.1-201ENST00000604653 858 ntBASIC5.46□□□□□ -1.54
RNF4P78317 FAM27E4-201ENST00000605259 342 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AL445222.1-201ENST00000607259 628 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC5.46□□□□□ -1.54
RNF4P78317 AC019278.1-201ENST00000623516 479 ntBASIC5.46□□□□□ -1.54
RNF4P78317 SNX18P12-201ENST00000624821 759 ntBASIC5.46□□□□□ -1.54
RNF4P78317 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC5.46□□□□□ -1.54
RNF4P78317 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC5.46□□□□□ -1.54
RNF4P78317 AC130304.1-201ENST00000622942 2385 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
RNF4P78317 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
RNF4P78317 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
RNF4P78317 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
RNF4P78317 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
RNF4P78317 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
RNF4P78317 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
RNF4P78317 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
RNF4P78317 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
RNF4P78317 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
RNF4P78317 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
RNF4P78317 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
RNF4P78317 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
RNF4P78317 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
RNF4P78317 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
RNF4P78317 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
RNF4P78317 FRG1BP-201ENST00000278882 761 ntBASIC5.45□□□□□ -1.54
RNF4P78317 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
RNF4P78317 OR52B3P-201ENST00000314715 928 ntBASIC5.45□□□□□ -1.54
RNF4P78317 SYF2-202ENST00000354361 926 ntTSL 2 BASIC5.45□□□□□ -1.54
RNF4P78317 FRG1CP-201ENST00000358464 769 ntBASIC5.45□□□□□ -1.54
RNF4P78317 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
RNF4P78317 RNU6-223P-201ENST00000362830 107 ntBASIC5.45□□□□□ -1.54
RNF4P78317 RNY4P16-201ENST00000364768 94 ntBASIC5.45□□□□□ -1.54
RNF4P78317 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
RNF4P78317 RPL31P52-201ENST00000407532 367 ntBASIC5.45□□□□□ -1.54
RNF4P78317 MIR1302-11-201ENST00000408051 138 ntBASIC5.45□□□□□ -1.54
RNF4P78317 MIR1302-9-201ENST00000408365 138 ntBASIC5.45□□□□□ -1.54
RNF4P78317 MIR1302-10-201ENST00000408734 138 ntBASIC5.45□□□□□ -1.54
RNF4P78317 AL807761.1-201ENST00000417622 171 ntBASIC5.45□□□□□ -1.54
RNF4P78317 RPS15AP12-201ENST00000419498 388 ntBASIC5.45□□□□□ -1.54
RNF4P78317 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.45□□□□□ -1.54
RNF4P78317 AC096632.1-201ENST00000427395 310 ntBASIC5.45□□□□□ -1.54
RNF4P78317 AC006548.1-201ENST00000427470 102 ntBASIC5.45□□□□□ -1.54
RNF4P78317 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.45□□□□□ -1.54
RNF4P78317 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC5.45□□□□□ -1.54
RNF4P78317 RPS12P17-201ENST00000438591 377 ntBASIC5.45□□□□□ -1.54
RNF4P78317 AC016691.1-201ENST00000441321 413 ntBASIC5.45□□□□□ -1.54
RNF4P78317 AC023141.8-201ENST00000442554 208 ntBASIC5.45□□□□□ -1.54
RNF4P78317 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC5.45□□□□□ -1.54
RNF4P78317 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.45□□□□□ -1.54
RNF4P78317 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
RNF4P78317 AC011005.3-201ENST00000491624 395 ntBASIC5.45□□□□□ -1.54
RNF4P78317 AC108693.1-201ENST00000496068 432 ntBASIC5.45□□□□□ -1.54
RNF4P78317 SNORA40.12-201ENST00000516329 111 ntBASIC5.45□□□□□ -1.54
RNF4P78317 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.45□□□□□ -1.54
RNF4P78317 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.45□□□□□ -1.54
RNF4P78317 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.45□□□□□ -1.54
RNF4P78317 AC091078.2-201ENST00000557145 559 ntBASIC5.45□□□□□ -1.54
RNF4P78317 AC087477.6-201ENST00000559595 843 ntBASIC5.45□□□□□ -1.54
RNF4P78317 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC5.45□□□□□ -1.54
RNF4P78317 AC010928.3-201ENST00000587712 541 ntBASIC5.45□□□□□ -1.54
RNF4P78317 AC022432.1-201ENST00000595739 310 ntBASIC5.45□□□□□ -1.54
RNF4P78317 VN1R80P-201ENST00000597126 338 ntBASIC5.45□□□□□ -1.54
RNF4P78317 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC5.45□□□□□ -1.54
RNF4P78317 MIR1302-2-201ENST00000607096 138 ntBASIC5.45□□□□□ -1.54
RNF4P78317 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.45□□□□□ -1.54
RNF4P78317 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.45□□□□□ -1.54
RNF4P78317 AL355472.4-201ENST00000610233 626 ntBASIC5.45□□□□□ -1.54
RNF4P78317 DISC2.1-201ENST00000612827 205 ntBASIC5.45□□□□□ -1.54
RNF4P78317 AL355974.3-201ENST00000617383 467 ntBASIC5.45□□□□□ -1.54
RNF4P78317 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
RNF4P78317 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.45□□□□□ -1.54
RNF4P78317 CR381572.1-201ENST00000625098 102 ntBASIC5.45□□□□□ -1.54
RNF4P78317 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.45□□□□□ -1.54
RNF4P78317 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
RNF4P78317 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
RNF4P78317 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
RNF4P78317 XPOTP1-201ENST00000443317 2398 ntBASIC5.45□□□□□ -1.54
RNF4P78317 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
RNF4P78317 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms