Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 AC008040.2-201ENST00000461049 708 ntBASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 AC130371.2-201ENST00000619443 611 ntBASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
SNX9Q9Y5X1 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SNX9Q9Y5X1 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 AC091390.4-202ENST00000476426 537 ntBASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SNX9Q9Y5X1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 KRT8P41-201ENST00000533985 1514 ntBASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 MIR1238-201ENST00000408483 83 ntBASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 AL390955.1-201ENST00000428694 934 ntBASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SNX9Q9Y5X1 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.64■□□□□ 0.9
SNX9Q9Y5X1 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SNX9Q9Y5X1 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.64■□□□□ 0.9
SNX9Q9Y5X1 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.64■□□□□ 0.9
SNX9Q9Y5X1 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 FAM207BP-201ENST00000447172 505 ntBASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 DGCR10-201ENST00000609839 495 ntBASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 RNF165-205ENST00000588679 2904 ntBASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 SDHAP1-207ENST00000440850 2000 ntBASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms