Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 SLC25A24-204ENST00000569674 2357 ntBASIC19.48■□□□□ 0.71
LHX3Q9UBR4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
LHX3Q9UBR4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 AL390955.1-201ENST00000428694 934 ntBASIC19.47■□□□□ 0.71
LHX3Q9UBR4 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.47■□□□□ 0.71
LHX3Q9UBR4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LHX3Q9UBR4 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 AC093484.2-201ENST00000580996 2166 ntBASIC19.46■□□□□ 0.71
LHX3Q9UBR4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
LHX3Q9UBR4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 KRT8P11-201ENST00000409686 1436 ntBASIC19.45■□□□□ 0.7
LHX3Q9UBR4 KRT8P9-201ENST00000558927 1449 ntBASIC19.45■□□□□ 0.7
LHX3Q9UBR4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 MIR1238-201ENST00000408483 83 ntBASIC19.45■□□□□ 0.7
LHX3Q9UBR4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 AC097488.1-201ENST00000507834 756 ntBASIC19.45■□□□□ 0.7
LHX3Q9UBR4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 FITM1-202ENST00000559294 800 ntBASIC19.45■□□□□ 0.7
LHX3Q9UBR4 SLC25A1P4-201ENST00000567977 778 ntBASIC19.45■□□□□ 0.7
LHX3Q9UBR4 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LHX3Q9UBR4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 TSPY23P-201ENST00000440136 739 ntBASIC19.44■□□□□ 0.7
LHX3Q9UBR4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms