Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM4Q9C037 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM4Q9C037 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM4Q9C037 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM4Q9C037 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM4Q9C037 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM4Q9C037 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM4Q9C037 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM4Q9C037 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM4Q9C037 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM4Q9C037 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM4Q9C037 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM4Q9C037 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM4Q9C037 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM4Q9C037 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM4Q9C037 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM4Q9C037 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM4Q9C037 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 LSM12P1-201ENST00000411836 588 ntBASIC19.19■□□□□ 0.66
TRIM4Q9C037 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM4Q9C037 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM4Q9C037 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM4Q9C037 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 AC092720.2-201ENST00000602388 1665 ntBASIC19.19■□□□□ 0.66
TRIM4Q9C037 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM4Q9C037 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 AC093503.3-201ENST00000624917 2352 ntBASIC19.19■□□□□ 0.66
TRIM4Q9C037 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TRIM4Q9C037 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM4Q9C037 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM4Q9C037 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
TRIM4Q9C037 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM4Q9C037 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM4Q9C037 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM4Q9C037 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM4Q9C037 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM4Q9C037 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM4Q9C037 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM4Q9C037 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM4Q9C037 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM4Q9C037 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM4Q9C037 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM4Q9C037 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM4Q9C037 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM4Q9C037 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM4Q9C037 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM4Q9C037 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRIM4Q9C037 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM4Q9C037 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
TRIM4Q9C037 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM4Q9C037 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms