Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 KRT16P6-202ENST00000425692 1426 ntBASIC16.91■□□□□ 0.3
COL12A1Q99715 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.91■□□□□ 0.3
COL12A1Q99715 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.91■□□□□ 0.3
COL12A1Q99715 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL12A1Q99715 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL12A1Q99715 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.91■□□□□ 0.3
COL12A1Q99715 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL12A1Q99715 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.91■□□□□ 0.3
COL12A1Q99715 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
COL12A1Q99715 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
COL12A1Q99715 AC138894.3-201ENST00000603787 634 ntBASIC16.91■□□□□ 0.3
COL12A1Q99715 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL12A1Q99715 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL12A1Q99715 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
COL12A1Q99715 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
COL12A1Q99715 RPL13AP23-201ENST00000480739 586 ntBASIC16.9■□□□□ 0.3
COL12A1Q99715 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.9■□□□□ 0.3
COL12A1Q99715 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.9■□□□□ 0.3
COL12A1Q99715 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.9■□□□□ 0.3
COL12A1Q99715 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.9■□□□□ 0.3
COL12A1Q99715 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL12A1Q99715 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
COL12A1Q99715 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL12A1Q99715 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL12A1Q99715 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL12A1Q99715 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL12A1Q99715 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
COL12A1Q99715 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
COL12A1Q99715 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL12A1Q99715 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.9■□□□□ 0.3
COL12A1Q99715 HLA-F-220ENST00000434407 884 ntBASIC16.9■□□□□ 0.3
COL12A1Q99715 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL12A1Q99715 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.9■□□□□ 0.3
COL12A1Q99715 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.9■□□□□ 0.3
COL12A1Q99715 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.9■□□□□ 0.3
COL12A1Q99715 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL12A1Q99715 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL12A1Q99715 KRT8P17-201ENST00000453110 1448 ntBASIC16.89■□□□□ 0.3
COL12A1Q99715 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL12A1Q99715 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL12A1Q99715 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.89■□□□□ 0.29
COL12A1Q99715 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL12A1Q99715 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.89■□□□□ 0.29
COL12A1Q99715 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.89■□□□□ 0.29
COL12A1Q99715 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.89■□□□□ 0.29
COL12A1Q99715 AL121772.3-201ENST00000610840 674 ntBASIC16.89■□□□□ 0.29
COL12A1Q99715 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.89■□□□□ 0.29
COL12A1Q99715 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL12A1Q99715 DRAXINP1-201ENST00000437611 948 ntBASIC16.89■□□□□ 0.29
COL12A1Q99715 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL12A1Q99715 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.89■□□□□ 0.29
COL12A1Q99715 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL12A1Q99715 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL12A1Q99715 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.89■□□□□ 0.29
COL12A1Q99715 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.89■□□□□ 0.29
COL12A1Q99715 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL12A1Q99715 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.89■□□□□ 0.29
COL12A1Q99715 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL12A1Q99715 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.89■□□□□ 0.29
COL12A1Q99715 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.88■□□□□ 0.29
COL12A1Q99715 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
COL12A1Q99715 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.88■□□□□ 0.29
COL12A1Q99715 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL12A1Q99715 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.88■□□□□ 0.29
COL12A1Q99715 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.88■□□□□ 0.29
COL12A1Q99715 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
COL12A1Q99715 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
COL12A1Q99715 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL12A1Q99715 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 AC098831.1-202ENST00000438821 336 ntBASIC16.88■□□□□ 0.29
COL12A1Q99715 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.88■□□□□ 0.29
COL12A1Q99715 AC064862.7-201ENST00000604520 867 ntBASIC16.88■□□□□ 0.29
COL12A1Q99715 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.88■□□□□ 0.29
COL12A1Q99715 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC16.88■□□□□ 0.29
COL12A1Q99715 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 TOB2P1-201ENST00000469761 992 ntBASIC16.88■□□□□ 0.29
COL12A1Q99715 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
COL12A1Q99715 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.88■□□□□ 0.29
COL12A1Q99715 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 MIR2861-201ENST00000636310 90 ntBASIC16.88■□□□□ 0.29
COL12A1Q99715 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.88■□□□□ 0.29
COL12A1Q99715 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL12A1Q99715 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL12A1Q99715 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL12A1Q99715 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL12A1Q99715 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL12A1Q99715 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL12A1Q99715 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.87■□□□□ 0.29
COL12A1Q99715 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL12A1Q99715 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms