Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.46■□□□□ 0.23
CSMD1Q96PZ7 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 KRT16P4-201ENST00000453883 522 ntBASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.46■□□□□ 0.22
CSMD1Q96PZ7 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 AL121912.1-201ENST00000603683 238 ntBASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 AL139424.1-201ENST00000607572 797 ntBASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 HLA-A-209ENST00000638375 975 ntBASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 AC012676.1-201ENST00000574705 1949 ntBASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
CSMD1Q96PZ7 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 AL590627.1-203ENST00000421194 1026 ntBASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 TSSC2-201ENST00000450217 709 ntBASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 AC055717.3-201ENST00000622967 595 ntBASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 KRT8P20-201ENST00000423953 1409 ntBASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CSMD1Q96PZ7 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.43■□□□□ 0.22
CSMD1Q96PZ7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.43■□□□□ 0.22
CSMD1Q96PZ7 TFP1-202ENST00000475455 1573 ntBASIC16.43■□□□□ 0.22
CSMD1Q96PZ7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CSMD1Q96PZ7 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CSMD1Q96PZ7 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CSMD1Q96PZ7 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CSMD1Q96PZ7 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.43■□□□□ 0.22
CSMD1Q96PZ7 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.43■□□□□ 0.22
CSMD1Q96PZ7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.43■□□□□ 0.22
CSMD1Q96PZ7 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.43■□□□□ 0.22
CSMD1Q96PZ7 AC131212.4-201ENST00000623606 975 ntBASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms