Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TTC28Q96AY4 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TTC28Q96AY4 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.68■□□□□ 0.74
TTC28Q96AY4 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 AL117328.2-201ENST00000624617 1940 ntBASIC19.67■□□□□ 0.74
TTC28Q96AY4 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TTC28Q96AY4 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TTC28Q96AY4 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TTC28Q96AY4 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TTC28Q96AY4 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 MIR3687-2-201ENST00000577708 61 ntBASIC19.67■□□□□ 0.74
TTC28Q96AY4 MIR3687-1-201ENST00000614492 61 ntBASIC19.67■□□□□ 0.74
TTC28Q96AY4 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 Z83836.1-201ENST00000624605 1642 ntBASIC19.67■□□□□ 0.74
TTC28Q96AY4 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TTC28Q96AY4 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TTC28Q96AY4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.67■□□□□ 0.74
TTC28Q96AY4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TTC28Q96AY4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TTC28Q96AY4 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.66■□□□□ 0.74
TTC28Q96AY4 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.66■□□□□ 0.74
TTC28Q96AY4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC19.66■□□□□ 0.74
TTC28Q96AY4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.66■□□□□ 0.74
TTC28Q96AY4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.66■□□□□ 0.74
TTC28Q96AY4 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.66■□□□□ 0.74
TTC28Q96AY4 SPCS2P1-201ENST00000561636 679 ntBASIC19.66■□□□□ 0.74
TTC28Q96AY4 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 AC104109.2-201ENST00000602919 1418 ntBASIC19.66■□□□□ 0.74
TTC28Q96AY4 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.66■□□□□ 0.74
TTC28Q96AY4 AL591424.1-201ENST00000442569 1213 ntBASIC19.66■□□□□ 0.74
TTC28Q96AY4 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.66■□□□□ 0.74
TTC28Q96AY4 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TTC28Q96AY4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TTC28Q96AY4 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
TTC28Q96AY4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TTC28Q96AY4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.65■□□□□ 0.74
TTC28Q96AY4 SEC1P-202ENST00000473944 940 ntBASIC19.65■□□□□ 0.74
TTC28Q96AY4 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.65■□□□□ 0.74
TTC28Q96AY4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TTC28Q96AY4 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TTC28Q96AY4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TTC28Q96AY4 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TTC28Q96AY4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TTC28Q96AY4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.65■□□□□ 0.74
TTC28Q96AY4 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TTC28Q96AY4 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TTC28Q96AY4 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.65■□□□□ 0.74
TTC28Q96AY4 AC099336.1-202ENST00000602961 463 ntBASIC19.65■□□□□ 0.74
TTC28Q96AY4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.65■□□□□ 0.74
TTC28Q96AY4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.65■□□□□ 0.74
TTC28Q96AY4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.65■□□□□ 0.74
TTC28Q96AY4 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TTC28Q96AY4 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TTC28Q96AY4 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TTC28Q96AY4 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.64■□□□□ 0.74
TTC28Q96AY4 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.64■□□□□ 0.74
TTC28Q96AY4 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.74
TTC28Q96AY4 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TTC28Q96AY4 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TTC28Q96AY4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TTC28Q96AY4 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
TTC28Q96AY4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
TTC28Q96AY4 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TTC28Q96AY4 HNRNPDP1-201ENST00000439535 754 ntBASIC19.64■□□□□ 0.73
TTC28Q96AY4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms