Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 AL049812.1-201ENST00000432563 2267 ntBASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SHROOM3Q8TF72 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 KSR1P1-201ENST00000446298 240 ntBASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 AC133561.5-201ENST00000635547 218 ntBASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 AC087289.5-201ENST00000586076 3175 ntBASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.69■□□□□ 0.74
SHROOM3Q8TF72 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 KRT18P35-201ENST00000510488 1269 ntBASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 AL160286.2-201ENST00000567150 934 ntBASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHROOM3Q8TF72 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 KRT8P41-201ENST00000533985 1514 ntBASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms