Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 RNF152P1-201ENST00000397754 604 ntBASIC18.81■□□□□ 0.6
LMX1AQ8TE12 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 YBX1P2-201ENST00000489612 999 ntBASIC18.81■□□□□ 0.6
LMX1AQ8TE12 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMX1AQ8TE12 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 AC092647.4-201ENST00000457211 535 ntBASIC18.79■□□□□ 0.6
LMX1AQ8TE12 AP003041.3-201ENST00000527151 707 ntBASIC18.79■□□□□ 0.6
LMX1AQ8TE12 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 AL512604.3-201ENST00000569583 964 ntBASIC18.79■□□□□ 0.6
LMX1AQ8TE12 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 KRT8P11-201ENST00000409686 1436 ntBASIC18.79■□□□□ 0.6
LMX1AQ8TE12 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
LMX1AQ8TE12 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 TSPY5P-201ENST00000426936 936 ntBASIC18.78■□□□□ 0.6
LMX1AQ8TE12 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1AQ8TE12 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1AQ8TE12 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms