Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 AL161938.1-201ENST00000569833 2180 ntBASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 FZD10-202ENST00000539839 3282 ntBASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 AL133373.2-201ENST00000623187 2828 ntBASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 AP001271.2-201ENST00000624018 1556 ntBASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 HTR7P1-202ENST00000624664 4411 ntBASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ZNF540Q8NDQ6 PCDHB18P-201ENST00000524813 2368 ntBASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 AC091799.1-201ENST00000422823 811 ntBASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 AC010536.3-201ENST00000620306 533 ntBASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 AC006333.2-201ENST00000607957 2099 ntBASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.84■□□□□ 0.45
ZNF540Q8NDQ6 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
ZNF540Q8NDQ6 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
ZNF540Q8NDQ6 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.83■□□□□ 0.45
ZNF540Q8NDQ6 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 AC013268.1-206ENST00000638368 961 ntBASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 AC112229.1-201ENST00000639295 961 ntBASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
ZNF540Q8NDQ6 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms