Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 PTBP1P-201ENST00000554374 1601 ntBASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 AC093787.1-201ENST00000450396 207 ntBASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
DEPDC4Q8N2C3 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 AC010980.2-201ENST00000587099 1412 ntBASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 LSM12P1-201ENST00000411836 588 ntBASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 KRT18P6-201ENST00000555540 1265 ntBASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 AL031963.3-201ENST00000606441 850 ntBASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 AC092118.2-201ENST00000613495 667 ntBASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
DEPDC4Q8N2C3 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 KRT8P20-201ENST00000423953 1409 ntBASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 AC097658.1-201ENST00000475555 843 ntBASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
DEPDC4Q8N2C3 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
DEPDC4Q8N2C3 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.89■□□□□ 0.46
DEPDC4Q8N2C3 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
DEPDC4Q8N2C3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
DEPDC4Q8N2C3 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
DEPDC4Q8N2C3 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
DEPDC4Q8N2C3 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
DEPDC4Q8N2C3 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms