Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 KRT8P26-201ENST00000534154 1276 ntBASIC26.25■■□□□ 1.79
NPHP3Q7Z494 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP3Q7Z494 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 WDR6-223ENST00000627177 207 ntTSL 2 BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP3Q7Z494 AF106564.1-201ENST00000607058 2553 ntBASIC26.23■■□□□ 1.79
NPHP3Q7Z494 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 AL160237.2-201ENST00000556165 472 ntBASIC26.23■■□□□ 1.79
NPHP3Q7Z494 AL732292.2-201ENST00000609649 430 ntBASIC26.23■■□□□ 1.79
NPHP3Q7Z494 GXYLT1P4-201ENST00000613576 1192 ntBASIC26.23■■□□□ 1.79
NPHP3Q7Z494 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC26.23■■□□□ 1.79
NPHP3Q7Z494 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 AP000593.1-201ENST00000393668 712 ntBASIC26.22■■□□□ 1.79
NPHP3Q7Z494 CHCHD2P8-201ENST00000429873 447 ntBASIC26.22■■□□□ 1.79
NPHP3Q7Z494 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 AC093525.10-201ENST00000625130 1569 ntBASIC26.22■■□□□ 1.79
NPHP3Q7Z494 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP3Q7Z494 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 KRT18P1-202ENST00000452408 1331 ntBASIC26.21■■□□□ 1.79
NPHP3Q7Z494 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 IL11-204ENST00000590625 1028 ntTSL 2 BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP3Q7Z494 AL162741.1-201ENST00000565563 1558 ntBASIC26.2■■□□□ 1.79
NPHP3Q7Z494 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
NPHP3Q7Z494 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC26.2■■□□□ 1.79
NPHP3Q7Z494 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC26.2■■□□□ 1.79
NPHP3Q7Z494 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC26.2■■□□□ 1.79
NPHP3Q7Z494 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC26.2■■□□□ 1.79
NPHP3Q7Z494 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC26.2■■□□□ 1.79
NPHP3Q7Z494 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
NPHP3Q7Z494 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC26.2■■□□□ 1.79
NPHP3Q7Z494 MPI-205ENST00000562606 1052 ntTSL 3 BASIC26.2■■□□□ 1.79
NPHP3Q7Z494 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
NPHP3Q7Z494 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms