Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC58Q4VC31 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 AC141586.3-201ENST00000562166 1838 ntBASIC17.21■□□□□ 0.35
CCDC58Q4VC31 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 AL161938.1-201ENST00000569833 2180 ntBASIC17.21■□□□□ 0.35
CCDC58Q4VC31 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC58Q4VC31 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
CCDC58Q4VC31 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 AC079598.2-202ENST00000546624 1451 ntBASIC17.2■□□□□ 0.34
CCDC58Q4VC31 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC58Q4VC31 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC58Q4VC31 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms