Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC40Q4G0X9 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 KRT18P16-201ENST00000510337 1294 ntBASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC40Q4G0X9 LINC01465-201ENST00000408887 1940 ntBASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 TNXA-203ENST00000507684 2038 ntBASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 TEX21P-204ENST00000641479 1693 ntBASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC40Q4G0X9 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
CCDC40Q4G0X9 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
CCDC40Q4G0X9 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 PRKY-204ENST00000533551 1019 ntBASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC40Q4G0X9 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 HCG11-201ENST00000411553 5696 ntBASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC40Q4G0X9 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms