Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.68■□□□□ 0.9
SOX4Q06945 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.68■□□□□ 0.9
SOX4Q06945 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SOX4Q06945 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.68■□□□□ 0.9
SOX4Q06945 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SOX4Q06945 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.68■□□□□ 0.9
SOX4Q06945 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.67■□□□□ 0.9
SOX4Q06945 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX4Q06945 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX4Q06945 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SOX4Q06945 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX4Q06945 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.67■□□□□ 0.9
SOX4Q06945 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.67■□□□□ 0.9
SOX4Q06945 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX4Q06945 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX4Q06945 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.67■□□□□ 0.9
SOX4Q06945 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX4Q06945 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX4Q06945 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX4Q06945 AL137013.1-201ENST00000432946 1228 ntBASIC20.67■□□□□ 0.9
SOX4Q06945 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.67■□□□□ 0.9
SOX4Q06945 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
SOX4Q06945 AL023803.3-201ENST00000615559 522 ntBASIC20.67■□□□□ 0.9
SOX4Q06945 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.67■□□□□ 0.9
SOX4Q06945 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.67■□□□□ 0.9
SOX4Q06945 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.67■□□□□ 0.9
SOX4Q06945 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX4Q06945 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
SOX4Q06945 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX4Q06945 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX4Q06945 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.66■□□□□ 0.9
SOX4Q06945 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX4Q06945 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SOX4Q06945 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.66■□□□□ 0.9
SOX4Q06945 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX4Q06945 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX4Q06945 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX4Q06945 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.66■□□□□ 0.9
SOX4Q06945 AC007663.1-201ENST00000438948 1240 ntBASIC20.66■□□□□ 0.9
SOX4Q06945 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.66■□□□□ 0.9
SOX4Q06945 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.66■□□□□ 0.9
SOX4Q06945 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.66■□□□□ 0.9
SOX4Q06945 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.66■□□□□ 0.9
SOX4Q06945 AC092338.2-201ENST00000568827 1415 ntBASIC20.66■□□□□ 0.9
SOX4Q06945 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX4Q06945 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.66■□□□□ 0.9
SOX4Q06945 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX4Q06945 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.66■□□□□ 0.9
SOX4Q06945 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SOX4Q06945 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX4Q06945 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX4Q06945 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX4Q06945 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX4Q06945 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX4Q06945 SLC25A1P2-201ENST00000430693 912 ntBASIC20.65■□□□□ 0.9
SOX4Q06945 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.65■□□□□ 0.9
SOX4Q06945 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.65■□□□□ 0.9
SOX4Q06945 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.65■□□□□ 0.9
SOX4Q06945 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SOX4Q06945 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SOX4Q06945 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.64■□□□□ 0.9
SOX4Q06945 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SOX4Q06945 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.64■□□□□ 0.9
SOX4Q06945 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
SOX4Q06945 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
SOX4Q06945 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SOX4Q06945 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SOX4Q06945 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SOX4Q06945 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX4Q06945 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX4Q06945 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.64■□□□□ 0.89
SOX4Q06945 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX4Q06945 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.64■□□□□ 0.89
SOX4Q06945 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.64■□□□□ 0.89
SOX4Q06945 AC128688.1-201ENST00000487626 519 ntBASIC20.64■□□□□ 0.89
SOX4Q06945 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.64■□□□□ 0.89
SOX4Q06945 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
SOX4Q06945 AC116562.4-202ENST00000641738 218 ntBASIC20.64■□□□□ 0.89
SOX4Q06945 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.64■□□□□ 0.89
SOX4Q06945 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX4Q06945 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SOX4Q06945 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.64■□□□□ 0.89
SOX4Q06945 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
SOX4Q06945 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.63■□□□□ 0.89
SOX4Q06945 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.63■□□□□ 0.89
SOX4Q06945 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.63■□□□□ 0.89
SOX4Q06945 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX4Q06945 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX4Q06945 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SOX4Q06945 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SOX4Q06945 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SOX4Q06945 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.63■□□□□ 0.89
SOX4Q06945 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SOX4Q06945 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX4Q06945 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX4Q06945 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms