Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.61■□□□□ 0.25
ABCA4P78363 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
ABCA4P78363 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC16.61■□□□□ 0.25
ABCA4P78363 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 AL512604.3-201ENST00000569583 964 ntBASIC16.61■□□□□ 0.25
ABCA4P78363 AC141257.4-201ENST00000634557 245 ntBASIC16.61■□□□□ 0.25
ABCA4P78363 AC136944.6-201ENST00000634818 245 ntBASIC16.61■□□□□ 0.25
ABCA4P78363 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC16.61■□□□□ 0.25
ABCA4P78363 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ABCA4P78363 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.61■□□□□ 0.25
ABCA4P78363 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.61■□□□□ 0.25
ABCA4P78363 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.61■□□□□ 0.25
ABCA4P78363 AL353719.1-201ENST00000566847 864 ntBASIC16.61■□□□□ 0.25
ABCA4P78363 AC069148.1-201ENST00000608741 768 ntBASIC16.61■□□□□ 0.25
ABCA4P78363 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.61■□□□□ 0.25
ABCA4P78363 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.61■□□□□ 0.25
ABCA4P78363 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
ABCA4P78363 AL691432.3-201ENST00000621860 400 ntBASIC16.61■□□□□ 0.25
ABCA4P78363 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ABCA4P78363 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC16.6■□□□□ 0.25
ABCA4P78363 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ABCA4P78363 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
ABCA4P78363 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ABCA4P78363 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ABCA4P78363 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ABCA4P78363 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ABCA4P78363 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
ABCA4P78363 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
ABCA4P78363 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.6■□□□□ 0.25
ABCA4P78363 AL441883.1-201ENST00000566170 1045 ntBASIC16.6■□□□□ 0.25
ABCA4P78363 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ABCA4P78363 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.6■□□□□ 0.25
ABCA4P78363 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
ABCA4P78363 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ABCA4P78363 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
ABCA4P78363 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ABCA4P78363 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
ABCA4P78363 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ABCA4P78363 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.6■□□□□ 0.25
ABCA4P78363 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
ABCA4P78363 AP001271.2-201ENST00000624018 1556 ntBASIC16.6■□□□□ 0.25
ABCA4P78363 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.6■□□□□ 0.25
ABCA4P78363 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 FAM86EP-206ENST00000510506 987 ntBASIC16.59■□□□□ 0.25
ABCA4P78363 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.59■□□□□ 0.25
ABCA4P78363 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.59■□□□□ 0.25
ABCA4P78363 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ABCA4P78363 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
ABCA4P78363 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
ABCA4P78363 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC16.59■□□□□ 0.25
ABCA4P78363 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
ABCA4P78363 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
ABCA4P78363 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
ABCA4P78363 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
ABCA4P78363 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.59■□□□□ 0.25
ABCA4P78363 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.59■□□□□ 0.25
ABCA4P78363 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ABCA4P78363 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.59■□□□□ 0.25
ABCA4P78363 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.59■□□□□ 0.25
ABCA4P78363 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.59■□□□□ 0.25
ABCA4P78363 AC079834.2-201ENST00000609776 1949 ntBASIC16.59■□□□□ 0.25
ABCA4P78363 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ABCA4P78363 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ABCA4P78363 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
ABCA4P78363 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC16.58■□□□□ 0.25
ABCA4P78363 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ABCA4P78363 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
ABCA4P78363 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
ABCA4P78363 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ABCA4P78363 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.58■□□□□ 0.25
ABCA4P78363 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
ABCA4P78363 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.58■□□□□ 0.25
ABCA4P78363 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
ABCA4P78363 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
ABCA4P78363 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA4P78363 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms