Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.48■□□□□ 0.55
VSX2P58304 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.48■□□□□ 0.55
VSX2P58304 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
VSX2P58304 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.48■□□□□ 0.55
VSX2P58304 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.48■□□□□ 0.55
VSX2P58304 AL160286.2-201ENST00000567150 934 ntBASIC18.48■□□□□ 0.55
VSX2P58304 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.48■□□□□ 0.55
VSX2P58304 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.48■□□□□ 0.55
VSX2P58304 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VSX2P58304 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VSX2P58304 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VSX2P58304 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VSX2P58304 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VSX2P58304 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VSX2P58304 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VSX2P58304 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.48■□□□□ 0.55
VSX2P58304 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VSX2P58304 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VSX2P58304 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.47■□□□□ 0.55
VSX2P58304 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VSX2P58304 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
VSX2P58304 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
VSX2P58304 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.47■□□□□ 0.55
VSX2P58304 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
VSX2P58304 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.47■□□□□ 0.55
VSX2P58304 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.47■□□□□ 0.55
VSX2P58304 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.47■□□□□ 0.55
VSX2P58304 AC026271.3-201ENST00000571884 352 ntBASIC18.47■□□□□ 0.55
VSX2P58304 MIR6786-201ENST00000616843 113 ntBASIC18.47■□□□□ 0.55
VSX2P58304 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.47■□□□□ 0.55
VSX2P58304 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.47■□□□□ 0.55
VSX2P58304 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.47■□□□□ 0.55
VSX2P58304 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.47■□□□□ 0.55
VSX2P58304 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VSX2P58304 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.47■□□□□ 0.55
VSX2P58304 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX2P58304 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
VSX2P58304 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX2P58304 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.46■□□□□ 0.55
VSX2P58304 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VSX2P58304 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX2P58304 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.46■□□□□ 0.55
VSX2P58304 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX2P58304 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.46■□□□□ 0.55
VSX2P58304 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
VSX2P58304 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX2P58304 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.46■□□□□ 0.55
VSX2P58304 AC116562.2-201ENST00000507042 360 ntBASIC18.46■□□□□ 0.55
VSX2P58304 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VSX2P58304 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.46■□□□□ 0.55
VSX2P58304 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.46■□□□□ 0.55
VSX2P58304 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.46■□□□□ 0.55
VSX2P58304 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VSX2P58304 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
VSX2P58304 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VSX2P58304 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.54
VSX2P58304 FSCN1P1-201ENST00000568912 1481 ntBASIC18.46■□□□□ 0.54
VSX2P58304 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX2P58304 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.45■□□□□ 0.54
VSX2P58304 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VSX2P58304 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX2P58304 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.45■□□□□ 0.54
VSX2P58304 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VSX2P58304 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX2P58304 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VSX2P58304 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
VSX2P58304 RBM17P1-201ENST00000453646 1190 ntBASIC18.45■□□□□ 0.54
VSX2P58304 B3GAT3P1-201ENST00000471720 806 ntBASIC18.45■□□□□ 0.54
VSX2P58304 AC011506.1-201ENST00000474329 610 ntBASIC18.45■□□□□ 0.54
VSX2P58304 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX2P58304 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.45■□□□□ 0.54
VSX2P58304 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.45■□□□□ 0.54
VSX2P58304 BX088651.1-201ENST00000540551 451 ntBASIC18.45■□□□□ 0.54
VSX2P58304 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.45■□□□□ 0.54
VSX2P58304 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.45■□□□□ 0.54
VSX2P58304 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
VSX2P58304 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
VSX2P58304 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
VSX2P58304 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.45■□□□□ 0.54
VSX2P58304 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.45■□□□□ 0.54
VSX2P58304 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.45■□□□□ 0.54
VSX2P58304 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VSX2P58304 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.45■□□□□ 0.54
VSX2P58304 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX2P58304 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VSX2P58304 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
VSX2P58304 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VSX2P58304 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.44■□□□□ 0.54
VSX2P58304 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms