Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH6P52701 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH6P52701 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
MSH6P52701 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH6P52701 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC26.81■■□□□ 1.88
MSH6P52701 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC26.81■■□□□ 1.88
MSH6P52701 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH6P52701 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC26.81■■□□□ 1.88
MSH6P52701 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC26.81■■□□□ 1.88
MSH6P52701 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC26.81■■□□□ 1.88
MSH6P52701 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC26.81■■□□□ 1.88
MSH6P52701 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC26.81■■□□□ 1.88
MSH6P52701 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC26.81■■□□□ 1.88
MSH6P52701 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH6P52701 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC26.8■■□□□ 1.88
MSH6P52701 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC26.8■■□□□ 1.88
MSH6P52701 CD37-204ENST00000535669 1674 ntTSL 2 BASIC26.8■■□□□ 1.88
MSH6P52701 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
MSH6P52701 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
MSH6P52701 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
MSH6P52701 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
MSH6P52701 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC26.8■■□□□ 1.88
MSH6P52701 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
MSH6P52701 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
MSH6P52701 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC26.8■■□□□ 1.88
MSH6P52701 PNN-202ENST00000553331 656 ntTSL 3 BASIC26.8■■□□□ 1.88
MSH6P52701 BMF-207ENST00000559701 630 ntTSL 3 BASIC26.8■■□□□ 1.88
MSH6P52701 TPSP2-201ENST00000561760 610 ntBASIC26.8■■□□□ 1.88
MSH6P52701 LINC01711-201ENST00000598340 967 ntBASIC26.8■■□□□ 1.88
MSH6P52701 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC26.8■■□□□ 1.88
MSH6P52701 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC26.8■■□□□ 1.88
MSH6P52701 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC26.79■■□□□ 1.88
MSH6P52701 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC26.79■■□□□ 1.88
MSH6P52701 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC26.79■■□□□ 1.88
MSH6P52701 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC26.79■■□□□ 1.88
MSH6P52701 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 BUB3-202ENST00000368859 667 ntTSL 3 BASIC26.79■■□□□ 1.88
MSH6P52701 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC26.79■■□□□ 1.88
MSH6P52701 KRT18P13-201ENST00000400056 1290 ntBASIC26.79■■□□□ 1.88
MSH6P52701 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC26.79■■□□□ 1.88
MSH6P52701 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC26.79■■□□□ 1.88
MSH6P52701 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC26.79■■□□□ 1.88
MSH6P52701 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC26.79■■□□□ 1.88
MSH6P52701 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH6P52701 AL162741.1-201ENST00000565563 1558 ntBASIC26.78■■□□□ 1.88
MSH6P52701 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
MSH6P52701 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
MSH6P52701 MRPL3P1-201ENST00000400109 1033 ntBASIC26.78■■□□□ 1.88
MSH6P52701 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
MSH6P52701 KRT18P31-201ENST00000506277 1292 ntBASIC26.78■■□□□ 1.88
MSH6P52701 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC26.78■■□□□ 1.88
MSH6P52701 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC26.78■■□□□ 1.88
MSH6P52701 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
MSH6P52701 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC26.78■■□□□ 1.88
MSH6P52701 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC26.78■■□□□ 1.88
MSH6P52701 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
MSH6P52701 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC26.77■■□□□ 1.88
MSH6P52701 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC26.77■■□□□ 1.88
MSH6P52701 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC26.77■■□□□ 1.88
MSH6P52701 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
MSH6P52701 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC26.77■■□□□ 1.88
MSH6P52701 WWC2-AS2-201ENST00000578387 2183 ntBASIC26.77■■□□□ 1.88
MSH6P52701 TEX30-205ENST00000376029 959 ntTSL 2 BASIC26.77■■□□□ 1.88
MSH6P52701 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC26.77■■□□□ 1.88
MSH6P52701 DRAXINP1-201ENST00000437611 948 ntBASIC26.77■■□□□ 1.88
MSH6P52701 CIB2-208ENST00000560618 804 ntTSL 2 BASIC26.77■■□□□ 1.88
MSH6P52701 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC26.77■■□□□ 1.88
MSH6P52701 ERF-202ENST00000440177 2032 ntTSL 2 BASIC26.77■■□□□ 1.88
MSH6P52701 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC26.77■■□□□ 1.88
MSH6P52701 FP700111.2-201ENST00000619190 1892 ntBASIC26.77■■□□□ 1.88
MSH6P52701 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
MSH6P52701 PLK5-205ENST00000642079 1969 ntBASIC26.76■■□□□ 1.88
MSH6P52701 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
MSH6P52701 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
MSH6P52701 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
MSH6P52701 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
MSH6P52701 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
MSH6P52701 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
MSH6P52701 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
MSH6P52701 FOSL1P1-201ENST00000511041 816 ntBASIC26.76■■□□□ 1.87
MSH6P52701 AP000867.3-201ENST00000524675 377 ntBASIC26.76■■□□□ 1.87
MSH6P52701 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC26.76■■□□□ 1.87
MSH6P52701 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC26.76■■□□□ 1.87
MSH6P52701 CALM3-211ENST00000598871 561 ntTSL 4 BASIC26.76■■□□□ 1.87
MSH6P52701 BX640515.1-201ENST00000617215 977 ntBASIC26.76■■□□□ 1.87
MSH6P52701 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
MSH6P52701 BID-212ENST00000614949 1988 ntTSL 5 BASIC26.76■■□□□ 1.87
MSH6P52701 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC26.76■■□□□ 1.87
MSH6P52701 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC26.76■■□□□ 1.87
MSH6P52701 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms