Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.21■□□□□ 0.83
LIG3P49916 KRT18P29-201ENST00000397031 1267 ntBASIC20.21■□□□□ 0.83
LIG3P49916 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.21■□□□□ 0.83
LIG3P49916 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.21■□□□□ 0.83
LIG3P49916 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.21■□□□□ 0.83
LIG3P49916 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.21■□□□□ 0.83
LIG3P49916 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.21■□□□□ 0.83
LIG3P49916 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.21■□□□□ 0.83
LIG3P49916 AC006058.3-201ENST00000606217 1069 ntBASIC20.21■□□□□ 0.83
LIG3P49916 ITM2C-210ENST00000620962 501 ntBASIC20.21■□□□□ 0.83
LIG3P49916 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIG3P49916 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIG3P49916 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIG3P49916 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIG3P49916 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIG3P49916 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.2■□□□□ 0.82
LIG3P49916 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.2■□□□□ 0.82
LIG3P49916 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIG3P49916 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIG3P49916 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIG3P49916 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.2■□□□□ 0.82
LIG3P49916 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.2■□□□□ 0.82
LIG3P49916 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIG3P49916 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
LIG3P49916 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
LIG3P49916 UNC93B4-201ENST00000505679 747 ntBASIC20.2■□□□□ 0.82
LIG3P49916 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.2■□□□□ 0.82
LIG3P49916 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIG3P49916 SOX15-203ENST00000570788 1093 ntBASIC20.2■□□□□ 0.82
LIG3P49916 AC008403.3-201ENST00000598924 454 ntBASIC20.2■□□□□ 0.82
LIG3P49916 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIG3P49916 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIG3P49916 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIG3P49916 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIG3P49916 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
LIG3P49916 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LIG3P49916 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.19■□□□□ 0.82
LIG3P49916 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.19■□□□□ 0.82
LIG3P49916 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.19■□□□□ 0.82
LIG3P49916 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.19■□□□□ 0.82
LIG3P49916 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.19■□□□□ 0.82
LIG3P49916 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.19■□□□□ 0.82
LIG3P49916 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LIG3P49916 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.19■□□□□ 0.82
LIG3P49916 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.19■□□□□ 0.82
LIG3P49916 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.19■□□□□ 0.82
LIG3P49916 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.19■□□□□ 0.82
LIG3P49916 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIG3P49916 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.18■□□□□ 0.82
LIG3P49916 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LIG3P49916 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.18■□□□□ 0.82
LIG3P49916 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.18■□□□□ 0.82
LIG3P49916 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
LIG3P49916 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
LIG3P49916 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
LIG3P49916 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LIG3P49916 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIG3P49916 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
LIG3P49916 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
LIG3P49916 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.17■□□□□ 0.82
LIG3P49916 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
LIG3P49916 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIG3P49916 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
LIG3P49916 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms