Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
MSX2P35548 AC067852.2-201ENST00000590513 2313 ntBASIC18.43■□□□□ 0.54
MSX2P35548 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.43■□□□□ 0.54
MSX2P35548 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.43■□□□□ 0.54
MSX2P35548 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
MSX2P35548 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.42■□□□□ 0.54
MSX2P35548 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
MSX2P35548 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.42■□□□□ 0.54
MSX2P35548 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 AC012313.1-201ENST00000593393 3059 ntBASIC18.42■□□□□ 0.54
MSX2P35548 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
MSX2P35548 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.42■□□□□ 0.54
MSX2P35548 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 HLA-G-202ENST00000376815 851 ntBASIC18.42■□□□□ 0.54
MSX2P35548 HLA-G-203ENST00000376818 1127 ntBASIC18.42■□□□□ 0.54
MSX2P35548 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
MSX2P35548 TERF1P5-201ENST00000477545 1207 ntBASIC18.42■□□□□ 0.54
MSX2P35548 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.42■□□□□ 0.54
MSX2P35548 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.42■□□□□ 0.54
MSX2P35548 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.42■□□□□ 0.54
MSX2P35548 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.42■□□□□ 0.54
MSX2P35548 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.42■□□□□ 0.54
MSX2P35548 MYCNOS-205ENST00000641950 531 ntBASIC18.42■□□□□ 0.54
MSX2P35548 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
MSX2P35548 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.42■□□□□ 0.54
MSX2P35548 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
MSX2P35548 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MSX2P35548 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.41■□□□□ 0.54
MSX2P35548 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.41■□□□□ 0.54
MSX2P35548 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.41■□□□□ 0.54
MSX2P35548 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.41■□□□□ 0.54
MSX2P35548 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.41■□□□□ 0.54
MSX2P35548 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
MSX2P35548 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.41■□□□□ 0.54
MSX2P35548 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.41■□□□□ 0.54
MSX2P35548 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.41■□□□□ 0.54
MSX2P35548 KRT18P14-201ENST00000534205 1250 ntBASIC18.41■□□□□ 0.54
MSX2P35548 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.41■□□□□ 0.54
MSX2P35548 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.41■□□□□ 0.54
MSX2P35548 NOC2LP2-201ENST00000407594 1944 ntBASIC18.41■□□□□ 0.54
MSX2P35548 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MSX2P35548 AL512353.2-201ENST00000448759 1962 ntBASIC18.41■□□□□ 0.54
MSX2P35548 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.41■□□□□ 0.54
MSX2P35548 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 Z98044.1-201ENST00000632503 1764 ntBASIC18.4■□□□□ 0.54
MSX2P35548 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
MSX2P35548 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.4■□□□□ 0.54
MSX2P35548 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
MSX2P35548 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
MSX2P35548 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
MSX2P35548 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.4■□□□□ 0.54
MSX2P35548 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.4■□□□□ 0.54
MSX2P35548 AC123595.1-201ENST00000440769 1046 ntBASIC18.4■□□□□ 0.54
MSX2P35548 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.4■□□□□ 0.54
MSX2P35548 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.4■□□□□ 0.54
MSX2P35548 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.4■□□□□ 0.54
MSX2P35548 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MSX2P35548 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
MSX2P35548 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
MSX2P35548 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms