Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SDC1P18827 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SDC1P18827 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.54
SDC1P18827 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.39■□□□□ 0.53
SDC1P18827 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SDC1P18827 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SDC1P18827 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SDC1P18827 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.39■□□□□ 0.53
SDC1P18827 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.39■□□□□ 0.53
SDC1P18827 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.39■□□□□ 0.53
SDC1P18827 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SDC1P18827 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SDC1P18827 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SDC1P18827 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
SDC1P18827 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SDC1P18827 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC1P18827 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.38■□□□□ 0.53
SDC1P18827 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SDC1P18827 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC1P18827 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC1P18827 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.38■□□□□ 0.53
SDC1P18827 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.38■□□□□ 0.53
SDC1P18827 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.38■□□□□ 0.53
SDC1P18827 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
SDC1P18827 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC1P18827 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SDC1P18827 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.38■□□□□ 0.53
SDC1P18827 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
SDC1P18827 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC1P18827 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.38■□□□□ 0.53
SDC1P18827 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
SDC1P18827 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.38■□□□□ 0.53
SDC1P18827 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SDC1P18827 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.38■□□□□ 0.53
SDC1P18827 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC1P18827 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SDC1P18827 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SDC1P18827 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SDC1P18827 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SDC1P18827 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.38■□□□□ 0.53
SDC1P18827 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SDC1P18827 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC1P18827 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
SDC1P18827 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SDC1P18827 AL138781.2-201ENST00000617896 1843 ntBASIC18.37■□□□□ 0.53
SDC1P18827 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC1P18827 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC1P18827 FP475955.4-201ENST00000623131 1990 ntBASIC18.37■□□□□ 0.53
SDC1P18827 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC1P18827 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SDC1P18827 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.37■□□□□ 0.53
SDC1P18827 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC1P18827 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SDC1P18827 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SDC1P18827 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SDC1P18827 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC1P18827 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.37■□□□□ 0.53
SDC1P18827 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC1P18827 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC1P18827 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC1P18827 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SDC1P18827 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SDC1P18827 IRX1P1-201ENST00000438849 1838 ntBASIC18.37■□□□□ 0.53
SDC1P18827 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SDC1P18827 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.37■□□□□ 0.53
SDC1P18827 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.36■□□□□ 0.53
SDC1P18827 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.36■□□□□ 0.53
SDC1P18827 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SDC1P18827 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.36■□□□□ 0.53
SDC1P18827 AL355802.2-201ENST00000402069 882 ntBASIC18.36■□□□□ 0.53
SDC1P18827 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SDC1P18827 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.36■□□□□ 0.53
SDC1P18827 POM121L13P-201ENST00000422362 380 ntBASIC18.36■□□□□ 0.53
SDC1P18827 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
SDC1P18827 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.36■□□□□ 0.53
SDC1P18827 UNC93B5-201ENST00000530315 699 ntBASIC18.36■□□□□ 0.53
SDC1P18827 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.36■□□□□ 0.53
SDC1P18827 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.36■□□□□ 0.53
SDC1P18827 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms