Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCANP13611 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCANP13611 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCANP13611 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VCANP13611 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.04■□□□□ 0.8
VCANP13611 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.04■□□□□ 0.8
VCANP13611 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCANP13611 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.04■□□□□ 0.8
VCANP13611 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.04■□□□□ 0.8
VCANP13611 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCANP13611 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
VCANP13611 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCANP13611 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.03■□□□□ 0.8
VCANP13611 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.03■□□□□ 0.8
VCANP13611 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.03■□□□□ 0.8
VCANP13611 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.03■□□□□ 0.8
VCANP13611 AC148477.8-201ENST00000624298 468 ntBASIC20.03■□□□□ 0.8
VCANP13611 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VCANP13611 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCANP13611 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VCANP13611 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCANP13611 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.03■□□□□ 0.8
VCANP13611 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VCANP13611 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
VCANP13611 AC004967.1-201ENST00000453589 447 ntBASIC20.03■□□□□ 0.8
VCANP13611 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VCANP13611 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.02■□□□□ 0.8
VCANP13611 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VCANP13611 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VCANP13611 DNAJB3-202ENST00000449667 1266 ntBASIC20.02■□□□□ 0.8
VCANP13611 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC20.02■□□□□ 0.8
VCANP13611 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.02■□□□□ 0.8
VCANP13611 KRT8P26-201ENST00000534154 1276 ntBASIC20.02■□□□□ 0.8
VCANP13611 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC20.02■□□□□ 0.8
VCANP13611 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VCANP13611 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
VCANP13611 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
VCANP13611 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.02■□□□□ 0.8
VCANP13611 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCANP13611 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCANP13611 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCANP13611 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.02■□□□□ 0.8
VCANP13611 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.02■□□□□ 0.8
VCANP13611 PNKD-204ENST00000436005 978 ntTSL 5 BASIC20.02■□□□□ 0.8
VCANP13611 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.02■□□□□ 0.8
VCANP13611 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.02■□□□□ 0.8
VCANP13611 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
VCANP13611 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
VCANP13611 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
VCANP13611 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCANP13611 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
VCANP13611 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC20.01■□□□□ 0.79
VCANP13611 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC20.01■□□□□ 0.79
VCANP13611 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCANP13611 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.01■□□□□ 0.79
VCANP13611 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.01■□□□□ 0.79
VCANP13611 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.01■□□□□ 0.79
VCANP13611 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VCANP13611 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.01■□□□□ 0.79
VCANP13611 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.01■□□□□ 0.79
VCANP13611 AC139887.3-201ENST00000568585 713 ntBASIC20.01■□□□□ 0.79
VCANP13611 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.01■□□□□ 0.79
VCANP13611 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VCANP13611 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.01■□□□□ 0.79
VCANP13611 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.01■□□□□ 0.79
VCANP13611 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.01■□□□□ 0.79
VCANP13611 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VCANP13611 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.01■□□□□ 0.79
VCANP13611 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VCANP13611 KRT8P20-201ENST00000423953 1409 ntBASIC20.01■□□□□ 0.79
VCANP13611 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.01■□□□□ 0.79
VCANP13611 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCANP13611 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCANP13611 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VCANP13611 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20■□□□□ 0.79
VCANP13611 AP005901.3-202ENST00000581653 237 ntBASIC20■□□□□ 0.79
VCANP13611 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20■□□□□ 0.79
VCANP13611 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCANP13611 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VCANP13611 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20■□□□□ 0.79
VCANP13611 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCANP13611 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VCANP13611 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20■□□□□ 0.79
VCANP13611 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20■□□□□ 0.79
VCANP13611 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20■□□□□ 0.79
VCANP13611 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20■□□□□ 0.79
VCANP13611 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20■□□□□ 0.79
VCANP13611 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20■□□□□ 0.79
VCANP13611 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20■□□□□ 0.79
VCANP13611 TFP1-202ENST00000475455 1573 ntBASIC20■□□□□ 0.79
VCANP13611 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCANP13611 MED22-202ENST00000371999 987 ntTSL 3 BASIC20■□□□□ 0.79
VCANP13611 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20■□□□□ 0.79
VCANP13611 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VCANP13611 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VCANP13611 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
VCANP13611 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.99■□□□□ 0.79
VCANP13611 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
VCANP13611 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCANP13611 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms