Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
HMGB1P09429 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
HMGB1P09429 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
HMGB1P09429 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC22.79■■□□□ 1.24
HMGB1P09429 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC22.79■■□□□ 1.24
HMGB1P09429 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
HMGB1P09429 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
HMGB1P09429 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGB1P09429 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC22.78■■□□□ 1.24
HMGB1P09429 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC22.78■■□□□ 1.24
HMGB1P09429 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGB1P09429 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC22.78■■□□□ 1.24
HMGB1P09429 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGB1P09429 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
HMGB1P09429 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
HMGB1P09429 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
HMGB1P09429 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGB1P09429 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
HMGB1P09429 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGB1P09429 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC22.78■■□□□ 1.24
HMGB1P09429 C1QBPP2-201ENST00000528754 825 ntBASIC22.78■■□□□ 1.24
HMGB1P09429 RNF121-214ENST00000533380 870 ntTSL 3 BASIC22.78■■□□□ 1.24
HMGB1P09429 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
HMGB1P09429 ITM2C-210ENST00000620962 501 ntBASIC22.78■■□□□ 1.24
HMGB1P09429 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC22.78■■□□□ 1.24
HMGB1P09429 CABP2-204ENST00000636477 941 ntTSL 5 BASIC22.78■■□□□ 1.24
HMGB1P09429 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGB1P09429 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC22.78■■□□□ 1.24
HMGB1P09429 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGB1P09429 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGB1P09429 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC22.78■■□□□ 1.24
HMGB1P09429 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
HMGB1P09429 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC22.78■■□□□ 1.24
HMGB1P09429 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC22.77■■□□□ 1.24
HMGB1P09429 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
HMGB1P09429 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
HMGB1P09429 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
HMGB1P09429 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
HMGB1P09429 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
HMGB1P09429 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
HMGB1P09429 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
HMGB1P09429 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
HMGB1P09429 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
HMGB1P09429 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
HMGB1P09429 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC22.77■■□□□ 1.24
HMGB1P09429 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
HMGB1P09429 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGB1P09429 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC22.76■■□□□ 1.23
HMGB1P09429 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC22.76■■□□□ 1.23
HMGB1P09429 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC22.76■■□□□ 1.23
HMGB1P09429 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC22.76■■□□□ 1.23
HMGB1P09429 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGB1P09429 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGB1P09429 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC22.76■■□□□ 1.23
HMGB1P09429 RPPH1-201ENST00000516869 333 ntBASIC22.76■■□□□ 1.23
HMGB1P09429 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC22.76■■□□□ 1.23
HMGB1P09429 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC22.76■■□□□ 1.23
HMGB1P09429 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGB1P09429 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC22.76■■□□□ 1.23
HMGB1P09429 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
HMGB1P09429 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC22.76■■□□□ 1.23
HMGB1P09429 AP000974.1-201ENST00000623909 2387 ntBASIC22.76■■□□□ 1.23
HMGB1P09429 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC22.76■■□□□ 1.23
HMGB1P09429 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
HMGB1P09429 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC22.75■■□□□ 1.23
HMGB1P09429 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
HMGB1P09429 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC22.75■■□□□ 1.23
HMGB1P09429 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
HMGB1P09429 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
HMGB1P09429 TSPY20P-201ENST00000450910 630 ntBASIC22.75■■□□□ 1.23
HMGB1P09429 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC22.75■■□□□ 1.23
HMGB1P09429 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC22.75■■□□□ 1.23
HMGB1P09429 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC22.75■■□□□ 1.23
HMGB1P09429 AL353708.3-201ENST00000610272 989 ntBASIC22.75■■□□□ 1.23
HMGB1P09429 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC22.75■■□□□ 1.23
HMGB1P09429 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
HMGB1P09429 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC22.75■■□□□ 1.23
HMGB1P09429 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
HMGB1P09429 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC22.74■■□□□ 1.23
HMGB1P09429 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
HMGB1P09429 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC22.74■■□□□ 1.23
HMGB1P09429 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGB1P09429 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGB1P09429 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGB1P09429 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGB1P09429 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
HMGB1P09429 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGB1P09429 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC22.74■■□□□ 1.23
HMGB1P09429 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC22.74■■□□□ 1.23
HMGB1P09429 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC22.74■■□□□ 1.23
HMGB1P09429 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC22.74■■□□□ 1.23
HMGB1P09429 AL445675.2-201ENST00000620291 557 ntBASIC22.74■■□□□ 1.23
HMGB1P09429 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC22.74■■□□□ 1.23
HMGB1P09429 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGB1P09429 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
HMGB1P09429 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
HMGB1P09429 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC22.74■■□□□ 1.23
HMGB1P09429 AL161938.1-201ENST00000569833 2180 ntBASIC22.74■■□□□ 1.23
HMGB1P09429 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
HMGB1P09429 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms