Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.88■□□□□ 0.61
SDC3O75056 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
SDC3O75056 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SDC3O75056 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC3O75056 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC3O75056 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC3O75056 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC3O75056 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.87■□□□□ 0.61
SDC3O75056 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC3O75056 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SDC3O75056 AL031133.1-201ENST00000406807 723 ntBASIC18.87■□□□□ 0.61
SDC3O75056 FAM8A6P-201ENST00000407496 1135 ntBASIC18.87■□□□□ 0.61
SDC3O75056 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.87■□□□□ 0.61
SDC3O75056 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.87■□□□□ 0.61
SDC3O75056 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.87■□□□□ 0.61
SDC3O75056 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SDC3O75056 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.87■□□□□ 0.61
SDC3O75056 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.87■□□□□ 0.61
SDC3O75056 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SDC3O75056 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.87■□□□□ 0.61
SDC3O75056 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SDC3O75056 AL023973.1-201ENST00000624619 620 ntBASIC18.87■□□□□ 0.61
SDC3O75056 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.87■□□□□ 0.61
SDC3O75056 MYC-208ENST00000641036 567 ntBASIC18.87■□□□□ 0.61
SDC3O75056 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.86■□□□□ 0.61
SDC3O75056 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.86■□□□□ 0.61
SDC3O75056 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
SDC3O75056 AP003041.3-201ENST00000527151 707 ntBASIC18.86■□□□□ 0.61
SDC3O75056 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.86■□□□□ 0.61
SDC3O75056 CKBP1-201ENST00000565489 1086 ntBASIC18.86■□□□□ 0.61
SDC3O75056 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.86■□□□□ 0.61
SDC3O75056 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SDC3O75056 AP005212.1-201ENST00000581547 1997 ntBASIC18.86■□□□□ 0.61
SDC3O75056 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.86■□□□□ 0.61
SDC3O75056 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.86■□□□□ 0.61
SDC3O75056 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.85■□□□□ 0.61
SDC3O75056 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SDC3O75056 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SDC3O75056 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SDC3O75056 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SDC3O75056 AC092667.1-201ENST00000434301 2586 ntBASIC18.85■□□□□ 0.61
SDC3O75056 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SDC3O75056 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SDC3O75056 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.85■□□□□ 0.61
SDC3O75056 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SDC3O75056 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.85■□□□□ 0.61
SDC3O75056 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SDC3O75056 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.85■□□□□ 0.61
SDC3O75056 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.85■□□□□ 0.61
SDC3O75056 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.85■□□□□ 0.61
SDC3O75056 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.85■□□□□ 0.61
SDC3O75056 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.85■□□□□ 0.61
SDC3O75056 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SDC3O75056 AC091076.1-201ENST00000610741 619 ntBASIC18.85■□□□□ 0.61
SDC3O75056 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.85■□□□□ 0.61
SDC3O75056 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SDC3O75056 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SDC3O75056 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.85■□□□□ 0.61
SDC3O75056 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SDC3O75056 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SDC3O75056 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SDC3O75056 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.85■□□□□ 0.61
SDC3O75056 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.85■□□□□ 0.61
SDC3O75056 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.84■□□□□ 0.61
SDC3O75056 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDC3O75056 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.84■□□□□ 0.61
SDC3O75056 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDC3O75056 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDC3O75056 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDC3O75056 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SDC3O75056 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDC3O75056 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.84■□□□□ 0.61
SDC3O75056 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SDC3O75056 AL359075.1-203ENST00000462729 1002 ntBASIC18.84■□□□□ 0.61
SDC3O75056 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.84■□□□□ 0.61
SDC3O75056 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
SDC3O75056 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.84■□□□□ 0.61
SDC3O75056 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDC3O75056 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDC3O75056 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDC3O75056 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SDC3O75056 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDC3O75056 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms