Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SGCEO43556 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.05■□□□□ 0.32
SGCEO43556 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SGCEO43556 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SGCEO43556 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.05■□□□□ 0.32
SGCEO43556 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.05■□□□□ 0.32
SGCEO43556 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
SGCEO43556 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.05■□□□□ 0.32
SGCEO43556 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SGCEO43556 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SGCEO43556 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.05■□□□□ 0.32
SGCEO43556 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SGCEO43556 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.04■□□□□ 0.32
SGCEO43556 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SGCEO43556 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.04■□□□□ 0.32
SGCEO43556 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SGCEO43556 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.04■□□□□ 0.32
SGCEO43556 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SGCEO43556 ESRRAP1-201ENST00000400596 1257 ntBASIC17.04■□□□□ 0.32
SGCEO43556 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.04■□□□□ 0.32
SGCEO43556 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
SGCEO43556 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.04■□□□□ 0.32
SGCEO43556 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.04■□□□□ 0.32
SGCEO43556 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.04■□□□□ 0.32
SGCEO43556 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.04■□□□□ 0.32
SGCEO43556 AC069544.1-201ENST00000609399 999 ntBASIC17.04■□□□□ 0.32
SGCEO43556 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
SGCEO43556 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.04■□□□□ 0.32
SGCEO43556 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SGCEO43556 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SGCEO43556 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
SGCEO43556 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SGCEO43556 KRT8P8-201ENST00000434750 1448 ntBASIC17.04■□□□□ 0.32
SGCEO43556 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SGCEO43556 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SGCEO43556 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 AC005332.7-201ENST00000614046 2005 ntBASIC17.03■□□□□ 0.32
SGCEO43556 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SGCEO43556 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 TUBB8P6-201ENST00000436895 1288 ntBASIC17.03■□□□□ 0.32
SGCEO43556 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.03■□□□□ 0.32
SGCEO43556 KRT18P16-201ENST00000510337 1294 ntBASIC17.03■□□□□ 0.32
SGCEO43556 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.03■□□□□ 0.32
SGCEO43556 CD99P1-205ENST00000527459 561 ntBASIC17.03■□□□□ 0.32
SGCEO43556 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.03■□□□□ 0.32
SGCEO43556 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.03■□□□□ 0.32
SGCEO43556 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
SGCEO43556 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SGCEO43556 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
SGCEO43556 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
SGCEO43556 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.02■□□□□ 0.32
SGCEO43556 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SGCEO43556 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SGCEO43556 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SGCEO43556 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms