Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
NPHP1O15259 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
NPHP1O15259 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC24.32■■□□□ 1.48
NPHP1O15259 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
NPHP1O15259 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC24.32■■□□□ 1.48
NPHP1O15259 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
NPHP1O15259 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC24.32■■□□□ 1.48
NPHP1O15259 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NPHP1O15259 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NPHP1O15259 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
NPHP1O15259 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC24.31■■□□□ 1.48
NPHP1O15259 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
NPHP1O15259 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NPHP1O15259 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
NPHP1O15259 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC24.31■■□□□ 1.48
NPHP1O15259 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NPHP1O15259 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
NPHP1O15259 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC24.31■■□□□ 1.48
NPHP1O15259 FAM86EP-206ENST00000510506 987 ntBASIC24.31■■□□□ 1.48
NPHP1O15259 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC24.31■■□□□ 1.48
NPHP1O15259 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC24.31■■□□□ 1.48
NPHP1O15259 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NPHP1O15259 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NPHP1O15259 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
NPHP1O15259 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC24.31■■□□□ 1.48
NPHP1O15259 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NPHP1O15259 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NPHP1O15259 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NPHP1O15259 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC24.3■■□□□ 1.48
NPHP1O15259 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
NPHP1O15259 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
NPHP1O15259 IPPK-202ENST00000375522 882 ntTSL 3 BASIC24.3■■□□□ 1.48
NPHP1O15259 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC24.3■■□□□ 1.48
NPHP1O15259 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
NPHP1O15259 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC24.3■■□□□ 1.48
NPHP1O15259 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC24.3■■□□□ 1.48
NPHP1O15259 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC24.29■■□□□ 1.48
NPHP1O15259 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NPHP1O15259 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NPHP1O15259 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
NPHP1O15259 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NPHP1O15259 CA15P1-201ENST00000481698 905 ntBASIC24.29■■□□□ 1.48
NPHP1O15259 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC24.29■■□□□ 1.48
NPHP1O15259 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC24.29■■□□□ 1.48
NPHP1O15259 AL441883.1-201ENST00000566170 1045 ntBASIC24.29■■□□□ 1.48
NPHP1O15259 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC24.29■■□□□ 1.48
NPHP1O15259 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
NPHP1O15259 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
NPHP1O15259 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
NPHP1O15259 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC24.29■■□□□ 1.48
NPHP1O15259 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
NPHP1O15259 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC24.29■■□□□ 1.48
NPHP1O15259 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC24.29■■□□□ 1.48
NPHP1O15259 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NPHP1O15259 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
NPHP1O15259 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NPHP1O15259 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NPHP1O15259 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NPHP1O15259 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC24.28■■□□□ 1.48
NPHP1O15259 AP003041.3-201ENST00000527151 707 ntBASIC24.28■■□□□ 1.48
NPHP1O15259 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NPHP1O15259 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC24.28■■□□□ 1.48
NPHP1O15259 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC24.28■■□□□ 1.48
NPHP1O15259 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
NPHP1O15259 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NPHP1O15259 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NPHP1O15259 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
NPHP1O15259 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC24.28■■□□□ 1.48
NPHP1O15259 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NPHP1O15259 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NPHP1O15259 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NPHP1O15259 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NPHP1O15259 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC24.27■■□□□ 1.48
NPHP1O15259 TPM4P1-201ENST00000436100 807 ntBASIC24.27■■□□□ 1.48
NPHP1O15259 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC24.27■■□□□ 1.48
NPHP1O15259 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC24.27■■□□□ 1.48
NPHP1O15259 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
NPHP1O15259 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NPHP1O15259 AP001271.2-201ENST00000624018 1556 ntBASIC24.27■■□□□ 1.48
NPHP1O15259 BX119927.1-201ENST00000636596 1552 ntBASIC24.27■■□□□ 1.48
NPHP1O15259 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
NPHP1O15259 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC24.27■■□□□ 1.48
NPHP1O15259 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NPHP1O15259 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NPHP1O15259 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NPHP1O15259 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
NPHP1O15259 AC026310.3-201ENST00000625186 2373 ntBASIC24.27■■□□□ 1.48
NPHP1O15259 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC24.27■■□□□ 1.47
NPHP1O15259 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.47
NPHP1O15259 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC24.26■■□□□ 1.47
NPHP1O15259 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
NPHP1O15259 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
NPHP1O15259 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC24.26■■□□□ 1.47
NPHP1O15259 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC24.26■■□□□ 1.47
NPHP1O15259 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms