Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 IRX1P1-201ENST00000438849 1838 ntBASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 AC069152.1-201ENST00000438030 544 ntBASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TCRBV7S3A2A0A539 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 AC104771.1-201ENST00000603335 964 ntBASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 AL121829.2-201ENST00000620908 328 ntBASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
TCRBV7S3A2A0A539 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 AC142086.2-201ENST00000569753 217 ntBASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 AC092666.2-201ENST00000613287 246 ntBASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms