Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC15.1■□□□□ 0.01
TRAV1-1A0A0B4J248 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC15.1■□□□□ 0.01
TRAV1-1A0A0B4J248 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
TRAV1-1A0A0B4J248 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV1-1A0A0B4J248 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV1-1A0A0B4J248 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV1-1A0A0B4J248 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
TRAV1-1A0A0B4J248 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV1-1A0A0B4J248 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV1-1A0A0B4J248 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 SLC25A6P5-201ENST00000435663 894 ntBASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
TRAV1-1A0A0B4J248 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC15.08■□□□□ 0.01
TRAV1-1A0A0B4J248 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
TRAV1-1A0A0B4J248 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRAV1-1A0A0B4J248 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRAV1-1A0A0B4J248 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
TRAV1-1A0A0B4J248 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC15.08■□□□□ 0.01
TRAV1-1A0A0B4J248 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.08■□□□□ 0.01
TRAV1-1A0A0B4J248 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 HLA-G-202ENST00000376815 851 ntBASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 HLA-G-203ENST00000376818 1127 ntBASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 DUX4L2-201ENST00000561772 1275 ntBASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 CCDC92B-201ENST00000575506 885 ntBASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 DUX4L6-201ENST00000626483 1275 ntBASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 DUX4L1-201ENST00000627662 1275 ntBASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 DUX4L8-201ENST00000629013 1275 ntBASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 DUX4L3-201ENST00000630187 1275 ntBASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 DUX4L7-201ENST00000630678 1275 ntBASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 DUX4L5-201ENST00000630834 1275 ntBASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 TSPY26P-201ENST00000476365 1326 ntBASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRAV1-1A0A0B4J248 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 AC012414.1-201ENST00000556676 535 ntBASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 AC083906.6-201ENST00000641366 219 ntBASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.07■□□□□ 0
TRAV1-1A0A0B4J248 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms