Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS13AQ96RL7 AL513328.1-201ENST00000446460 224 ntBASIC3.15□□□□□ -1.91
VPS13AQ96RL7 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS13AQ96RL7 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS13AQ96RL7 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS13AQ96RL7 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS13AQ96RL7 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS13AQ96RL7 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
VPS13AQ96RL7 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS13AQ96RL7 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.15□□□□□ -1.91
VPS13AQ96RL7 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC3.15□□□□□ -1.91
VPS13AQ96RL7 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AL672167.1-206ENST00000356293 943 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC022018.1-201ENST00000430685 241 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 MAPRE1P3-201ENST00000435438 796 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC092435.4-201ENST00000623012 4159 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC027287.1-201ENST00000553115 1453 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 Y_RNA.226-201ENST00000364337 114 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 MIR887-201ENST00000401258 79 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC010306.1-201ENST00000523223 1117 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AP002812.4-201ENST00000532139 286 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 RN7SL371P-201ENST00000578099 267 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC108206.1-201ENST00000570186 4159 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC097504.1-201ENST00000515103 2415 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 DPPA2P2-201ENST00000418220 897 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 snoU13.23-201ENST00000458863 104 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC009812.2-201ENST00000517657 457 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AL035413.2-201ENST00000604801 525 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 AC138965.3-201ENST00000623875 498 ntBASIC3.14□□□□□ -1.91
VPS13AQ96RL7 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
VPS13AQ96RL7 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AL353692.2-201ENST00000407054 335 ntBASIC3.13□□□□□ -1.91
VPS13AQ96RL7 FTH1P6-201ENST00000430768 320 ntBASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AC005229.2-201ENST00000456995 399 ntBASIC3.13□□□□□ -1.91
VPS13AQ96RL7 RN7SKP209-201ENST00000516888 304 ntBASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AC015849.2-201ENST00000605738 409 ntBASIC3.13□□□□□ -1.91
VPS13AQ96RL7 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 HIGD1AP12-201ENST00000427832 281 ntBASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AL357552.1-201ENST00000445254 415 ntBASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AC117440.1-201ENST00000474107 571 ntBASIC3.13□□□□□ -1.91
VPS13AQ96RL7 FCF1P3-201ENST00000496394 590 ntBASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 AL161431.1-201ENST00000618966 4205 ntBASIC3.13□□□□□ -1.91
VPS13AQ96RL7 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
VPS13AQ96RL7 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS13AQ96RL7 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS13AQ96RL7 ARL5AP4-201ENST00000430731 512 ntBASIC3.12□□□□□ -1.91
VPS13AQ96RL7 AC133134.1-201ENST00000466800 359 ntBASIC3.12□□□□□ -1.91
VPS13AQ96RL7 AC007619.2-201ENST00000605743 379 ntBASIC3.12□□□□□ -1.91
VPS13AQ96RL7 AL157817.1-201ENST00000614264 790 ntBASIC3.12□□□□□ -1.91
VPS13AQ96RL7 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS13AQ96RL7 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 135.9 ms