Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC005798.1-201ENST00000513715 387 ntBASIC2.03□□□□□ -2.09
APOBP04114 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC2.03□□□□□ -2.09
APOBP04114 AC233309.1-201ENST00000619522 751 ntBASIC2.03□□□□□ -2.09
APOBP04114 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.09
APOBP04114 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC2.02□□□□□ -2.09
APOBP04114 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 LSM5-206ENST00000409987 504 ntTSL 5 BASIC2.02□□□□□ -2.09
APOBP04114 SKP1P1-201ENST00000438081 489 ntBASIC2.02□□□□□ -2.09
APOBP04114 AL513124.1-201ENST00000450410 614 ntBASIC2.02□□□□□ -2.09
APOBP04114 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.02□□□□□ -2.09
APOBP04114 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.02□□□□□ -2.09
APOBP04114 AC233702.9-201ENST00000581528 203 ntBASIC2.02□□□□□ -2.09
APOBP04114 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC2.02□□□□□ -2.09
APOBP04114 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.02□□□□□ -2.09
APOBP04114 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC2.02□□□□□ -2.09
APOBP04114 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
APOBP04114 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
APOBP04114 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
APOBP04114 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC2.02□□□□□ -2.09
APOBP04114 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 MRPS33P4-201ENST00000434892 317 ntBASIC2.02□□□□□ -2.09
APOBP04114 RPL12P18-201ENST00000437175 325 ntBASIC2.02□□□□□ -2.09
APOBP04114 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.02□□□□□ -2.09
APOBP04114 AC087312.1-201ENST00000471411 480 ntBASIC2.02□□□□□ -2.09
APOBP04114 AC126389.1-201ENST00000477436 290 ntBASIC2.02□□□□□ -2.09
APOBP04114 YWHAEP4-201ENST00000505390 198 ntBASIC2.02□□□□□ -2.09
APOBP04114 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC2.02□□□□□ -2.09
APOBP04114 AC079600.2-201ENST00000550076 130 ntBASIC2.02□□□□□ -2.09
APOBP04114 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC2.02□□□□□ -2.09
APOBP04114 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC2.02□□□□□ -2.09
APOBP04114 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC2.02□□□□□ -2.09
APOBP04114 VN1R90P-201ENST00000595717 726 ntBASIC2.02□□□□□ -2.09
APOBP04114 MIR486-1-201ENST00000612171 68 ntBASIC2.02□□□□□ -2.09
APOBP04114 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
APOBP04114 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC2.02□□□□□ -2.09
APOBP04114 AC073325.2-201ENST00000339545 159 ntBASIC2.02□□□□□ -2.09
APOBP04114 NPM1P38-201ENST00000403835 865 ntBASIC2.02□□□□□ -2.09
APOBP04114 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.02□□□□□ -2.09
APOBP04114 AC017037.1-201ENST00000508460 471 ntBASIC2.02□□□□□ -2.09
APOBP04114 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC2.02□□□□□ -2.09
APOBP04114 AC243829.7-201ENST00000633081 225 ntBASIC2.02□□□□□ -2.09
APOBP04114 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC2.02□□□□□ -2.09
APOBP04114 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC2.02□□□□□ -2.09
APOBP04114 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC2.02□□□□□ -2.09
APOBP04114 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC2.02□□□□□ -2.09
APOBP04114 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
APOBP04114 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.02□□□□□ -2.09
APOBP04114 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC2.01□□□□□ -2.09
APOBP04114 RPL23AP82-202ENST00000427528 469 ntBASIC2.01□□□□□ -2.09
APOBP04114 AC073069.1-201ENST00000428657 441 ntBASIC2.01□□□□□ -2.09
APOBP04114 CENPBD1P1-201ENST00000464061 469 ntBASIC2.01□□□□□ -2.09
APOBP04114 AC068724.1-201ENST00000487100 792 ntBASIC2.01□□□□□ -2.09
APOBP04114 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
APOBP04114 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.01□□□□□ -2.09
APOBP04114 AC009159.1-201ENST00000618386 642 ntBASIC2.01□□□□□ -2.09
APOBP04114 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
APOBP04114 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
APOBP04114 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC2.01□□□□□ -2.09
APOBP04114 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
APOBP04114 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC2.01□□□□□ -2.09
APOBP04114 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC2.01□□□□□ -2.09
APOBP04114 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
APOBP04114 BX276092.3-201ENST00000424182 230 ntBASIC2.01□□□□□ -2.09
APOBP04114 RPL35AP12-201ENST00000425362 338 ntBASIC2.01□□□□□ -2.09
APOBP04114 SNORD109B-201ENST00000458961 67 ntBASIC2.01□□□□□ -2.09
APOBP04114 SNORD109A-201ENST00000459128 67 ntBASIC2.01□□□□□ -2.09
APOBP04114 KCTD9P6-201ENST00000522306 950 ntBASIC2.01□□□□□ -2.09
APOBP04114 AC018552.3-201ENST00000567416 561 ntBASIC2.01□□□□□ -2.09
APOBP04114 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC2.01□□□□□ -2.09
APOBP04114 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.01□□□□□ -2.09
APOBP04114 AC022149.2-201ENST00000621061 203 ntBASIC2.01□□□□□ -2.09
APOBP04114 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
APOBP04114 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
APOBP04114 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
APOBP04114 AC011266.1-201ENST00000624119 3569 ntBASIC2.01□□□□□ -2.09
APOBP04114 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
APOBP04114 RN7SKP199-201ENST00000410325 305 ntBASIC2.01□□□□□ -2.09
APOBP04114 RNU4-47P-201ENST00000410876 114 ntBASIC2.01□□□□□ -2.09
APOBP04114 NAP1L1P2-201ENST00000414182 1089 ntBASIC2.01□□□□□ -2.09
APOBP04114 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC2.01□□□□□ -2.09
APOBP04114 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC2.01□□□□□ -2.09
APOBP04114 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.01□□□□□ -2.09
APOBP04114 GVINP1-202ENST00000531871 7271 ntBASIC2.01□□□□□ -2.09
APOBP04114 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
APOBP04114 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
APOBP04114 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC2.01□□□□□ -2.09
APOBP04114 AC087190.4-201ENST00000574616 8334 ntBASIC2.01□□□□□ -2.09
APOBP04114 CD2-201ENST00000369477 478 ntTSL 2 BASIC2.01□□□□□ -2.09
APOBP04114 AC002075.2-201ENST00000425207 252 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms