Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AP004607.9-201ENST00000618202 316 ntBASIC3.18□□□□□ -1.9
VPS13AQ96RL7 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 GDA-209ENST00000545168 5362 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 RPL35AP12-201ENST00000425362 338 ntBASIC3.18□□□□□ -1.9
VPS13AQ96RL7 AC073069.1-201ENST00000428657 441 ntBASIC3.18□□□□□ -1.9
VPS13AQ96RL7 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 RNU6-991P-201ENST00000516168 107 ntBASIC3.18□□□□□ -1.9
VPS13AQ96RL7 AC006557.5-201ENST00000603126 811 ntBASIC3.18□□□□□ -1.9
VPS13AQ96RL7 SNORD91B-202ENST00000608459 222 ntBASIC3.18□□□□□ -1.9
VPS13AQ96RL7 MIR7154-201ENST00000620673 73 ntBASIC3.18□□□□□ -1.9
VPS13AQ96RL7 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS13AQ96RL7 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 RIOK3P1-201ENST00000418778 1528 ntBASIC3.17□□□□□ -1.9
VPS13AQ96RL7 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 RNU6-513P-201ENST00000516104 104 ntBASIC3.17□□□□□ -1.9
VPS13AQ96RL7 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 SEPT7P8-201ENST00000413308 775 ntBASIC3.17□□□□□ -1.9
VPS13AQ96RL7 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 RN7SKP31-201ENST00000516354 278 ntBASIC3.17□□□□□ -1.9
VPS13AQ96RL7 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 AC087888.1-201ENST00000550884 1254 ntBASIC3.17□□□□□ -1.9
VPS13AQ96RL7 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS13AQ96RL7 SMC4P1-201ENST00000414479 527 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 IFNA11P-201ENST00000446352 526 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 HMGB3P13-201ENST00000511263 607 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 RNA5SP367-201ENST00000516557 118 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AL121766.1-201ENST00000547436 487 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 DUXAP6-201ENST00000553858 601 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AC007496.3-201ENST00000624987 3443 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 U3.23-201ENST00000391132 200 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 RN7SL20P-201ENST00000488827 297 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 USP9YP2-201ENST00000504503 1000 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 USP9YP1-201ENST00000513521 1002 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 CYP4A43P-201ENST00000568156 121 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 IGHVIII-44-202ENST00000636235 289 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 ZNF90P1-201ENST00000480493 1951 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 SNORD67-201ENST00000390833 111 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AK5-208ENST00000478255 556 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS13AQ96RL7 TRBV12-2-201ENST00000489763 344 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 DEFB109F-201ENST00000491870 277 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AC020914.4-201ENST00000597690 277 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 AC091905.1-201ENST00000624400 311 ntBASIC3.16□□□□□ -1.9
VPS13AQ96RL7 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.15□□□□□ -1.9
VPS13AQ96RL7 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
VPS13AQ96RL7 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
VPS13AQ96RL7 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC3.15□□□□□ -1.9
VPS13AQ96RL7 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.15□□□□□ -1.9
VPS13AQ96RL7 RPS29P21-201ENST00000496272 170 ntBASIC3.15□□□□□ -1.9
VPS13AQ96RL7 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.15□□□□□ -1.9
VPS13AQ96RL7 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.15□□□□□ -1.9
VPS13AQ96RL7 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.15□□□□□ -1.9
VPS13AQ96RL7 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.15□□□□□ -1.9
VPS13AQ96RL7 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
VPS13AQ96RL7 MIR512-1-201ENST00000384913 84 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 158.1 ms