Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.16□□□□□ -1.74
SCN4AP35499 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.16□□□□□ -1.74
SCN4AP35499 AC087276.1-201ENST00000529659 480 ntBASIC4.16□□□□□ -1.74
SCN4AP35499 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.16□□□□□ -1.74
SCN4AP35499 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC4.16□□□□□ -1.74
SCN4AP35499 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
SCN4AP35499 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SCN4AP35499 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
SCN4AP35499 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.16□□□□□ -1.74
SCN4AP35499 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
SCN4AP35499 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SCN4AP35499 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SCN4AP35499 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
SCN4AP35499 SNORA5B-201ENST00000363786 132 ntBASIC4.16□□□□□ -1.74
SCN4AP35499 RNA5SP126-201ENST00000365092 109 ntBASIC4.16□□□□□ -1.74
SCN4AP35499 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SCN4AP35499 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
SCN4AP35499 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.16□□□□□ -1.74
SCN4AP35499 UBA52P3-201ENST00000491303 382 ntBASIC4.16□□□□□ -1.74
SCN4AP35499 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC4.16□□□□□ -1.74
SCN4AP35499 AC110794.1-201ENST00000505816 425 ntBASIC4.16□□□□□ -1.74
SCN4AP35499 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.16□□□□□ -1.74
SCN4AP35499 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.16□□□□□ -1.74
SCN4AP35499 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.16□□□□□ -1.74
SCN4AP35499 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.16□□□□□ -1.74
SCN4AP35499 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
SCN4AP35499 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SCN4AP35499 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
SCN4AP35499 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
SCN4AP35499 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.15□□□□□ -1.74
SCN4AP35499 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.15□□□□□ -1.74
SCN4AP35499 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
SCN4AP35499 MIR708-201ENST00000390708 88 ntBASIC4.15□□□□□ -1.75
SCN4AP35499 U3.39-201ENST00000408569 239 ntBASIC4.15□□□□□ -1.75
SCN4AP35499 AC017079.2-201ENST00000416102 485 ntBASIC4.15□□□□□ -1.75
SCN4AP35499 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.15□□□□□ -1.75
SCN4AP35499 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.15□□□□□ -1.75
SCN4AP35499 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.15□□□□□ -1.75
SCN4AP35499 AC027281.1-201ENST00000574178 758 ntBASIC4.15□□□□□ -1.75
SCN4AP35499 IGHV3-29-201ENST00000604817 344 ntBASIC4.15□□□□□ -1.75
SCN4AP35499 AC233309.1-201ENST00000619522 751 ntBASIC4.15□□□□□ -1.75
SCN4AP35499 OR5AC4P-202ENST00000642086 985 ntBASIC4.15□□□□□ -1.75
SCN4AP35499 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.15□□□□□ -1.75
SCN4AP35499 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SCN4AP35499 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SCN4AP35499 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
SCN4AP35499 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.15□□□□□ -1.75
SCN4AP35499 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SCN4AP35499 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.14□□□□□ -1.75
SCN4AP35499 ARF4P3-201ENST00000397387 509 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 AC093698.1-201ENST00000423843 571 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 OR5AW1P-201ENST00000426334 1006 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 HIGD1AP12-201ENST00000427832 281 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 AL513175.1-201ENST00000431492 780 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 ELOCP18-201ENST00000434209 337 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 AC000041.1-201ENST00000439655 175 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 KATNBL1P4-201ENST00000503545 918 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.14□□□□□ -1.75
SCN4AP35499 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.14□□□□□ -1.75
SCN4AP35499 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SCN4AP35499 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.14□□□□□ -1.75
SCN4AP35499 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.14□□□□□ -1.75
SCN4AP35499 AC093908.1-201ENST00000623125 8092 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SCN4AP35499 DDX6P1-205ENST00000441966 1436 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 AL645937.1-201ENST00000641739 1652 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
SCN4AP35499 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.14□□□□□ -1.75
SCN4AP35499 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.14□□□□□ -1.75
SCN4AP35499 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.14□□□□□ -1.75
SCN4AP35499 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SCN4AP35499 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.14□□□□□ -1.75
SCN4AP35499 HMGB1P21-201ENST00000502313 581 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 RNU6-579P-201ENST00000516879 102 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 MIR3945-201ENST00000581853 98 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.14□□□□□ -1.75
SCN4AP35499 AL732618.1-201ENST00000623251 301 ntBASIC4.14□□□□□ -1.75
SCN4AP35499 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SCN4AP35499 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
SCN4AP35499 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
SCN4AP35499 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.13□□□□□ -1.75
SCN4AP35499 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.13□□□□□ -1.75
SCN4AP35499 RNU4-47P-201ENST00000410876 114 ntBASIC4.13□□□□□ -1.75
SCN4AP35499 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.13□□□□□ -1.75
SCN4AP35499 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.13□□□□□ -1.75
SCN4AP35499 AC006028.1-201ENST00000438379 402 ntBASIC4.13□□□□□ -1.75
SCN4AP35499 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.13□□□□□ -1.75
SCN4AP35499 AC026801.2-201ENST00000515352 425 ntBASIC4.13□□□□□ -1.75
SCN4AP35499 RPL12P22-201ENST00000519073 490 ntBASIC4.13□□□□□ -1.75
SCN4AP35499 AP003392.5-201ENST00000607857 415 ntBASIC4.13□□□□□ -1.75
SCN4AP35499 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC4.13□□□□□ -1.75
SCN4AP35499 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SCN4AP35499 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SCN4AP35499 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SCN4AP35499 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SCN4AP35499 AC012020.1-201ENST00000624541 1728 ntBASIC4.13□□□□□ -1.75
SCN4AP35499 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SCN4AP35499 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
SCN4AP35499 AC011503.2-201ENST00000594230 1500 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms