Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC10.61□□□□□ -0.71
MSH5O43196 OR52I1-201ENST00000450052 1050 ntBASIC10.61□□□□□ -0.71
MSH5O43196 AL121914.1-201ENST00000450188 156 ntBASIC10.61□□□□□ -0.71
MSH5O43196 AL353194.1-201ENST00000451507 441 ntTSL 2 BASIC10.61□□□□□ -0.71
MSH5O43196 RPS5P7-201ENST00000456664 608 ntBASIC10.61□□□□□ -0.71
MSH5O43196 RN7SL761P-201ENST00000463259 278 ntBASIC10.61□□□□□ -0.71
MSH5O43196 RN7SL89P-201ENST00000480252 283 ntBASIC10.61□□□□□ -0.71
MSH5O43196 ATP5LP5-201ENST00000483050 299 ntBASIC10.61□□□□□ -0.71
MSH5O43196 LINC02489-201ENST00000527239 354 ntTSL 3 BASIC10.61□□□□□ -0.71
MSH5O43196 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC10.61□□□□□ -0.71
MSH5O43196 RN7SL689P-201ENST00000577215 297 ntBASIC10.61□□□□□ -0.71
MSH5O43196 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC10.61□□□□□ -0.71
MSH5O43196 AL109918.2-201ENST00000605188 279 ntBASIC10.61□□□□□ -0.71
MSH5O43196 AC123912.5-201ENST00000605470 343 ntBASIC10.61□□□□□ -0.71
MSH5O43196 PAAF1-202ENST00000376384 1500 ntTSL 5 BASIC10.61□□□□□ -0.71
MSH5O43196 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC10.61□□□□□ -0.71
MSH5O43196 CLCA3P-203ENST00000490028 2781 ntBASIC10.61□□□□□ -0.71
MSH5O43196 USP48-203ENST00000374732 3037 ntTSL 2 BASIC10.61□□□□□ -0.71
MSH5O43196 CR1-206ENST00000400960 6959 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
MSH5O43196 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
MSH5O43196 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
MSH5O43196 HLF-210ENST00000575345 3589 ntTSL 2 BASIC10.61□□□□□ -0.71
MSH5O43196 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
MSH5O43196 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
MSH5O43196 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
MSH5O43196 LIMA1-216ENST00000552909 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
MSH5O43196 ZMYND8-207ENST00000396281 5511 ntAPPRIS ALT2 TSL 2 BASIC10.6□□□□□ -0.71
MSH5O43196 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC10.6□□□□□ -0.71
MSH5O43196 GSTO2-202ENST00000369707 6423 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
MSH5O43196 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
MSH5O43196 CPB1-208ENST00000491148 1773 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
MSH5O43196 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
MSH5O43196 APP-209ENST00000440126 2846 ntTSL 2 BASIC10.6□□□□□ -0.71
MSH5O43196 ZNF19-210ENST00000567225 2838 ntTSL 3 BASIC10.6□□□□□ -0.71
MSH5O43196 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC10.6□□□□□ -0.71
MSH5O43196 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
MSH5O43196 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
MSH5O43196 SNORA57.2-201ENST00000391265 128 ntBASIC10.6□□□□□ -0.71
MSH5O43196 SNORA75.5-201ENST00000391291 81 ntBASIC10.6□□□□□ -0.71
MSH5O43196 RN7SKP119-201ENST00000410753 273 ntBASIC10.6□□□□□ -0.71
MSH5O43196 RN7SKP100-201ENST00000411258 284 ntBASIC10.6□□□□□ -0.71
MSH5O43196 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC10.6□□□□□ -0.71
MSH5O43196 AKR1B10P1-201ENST00000425765 942 ntBASIC10.6□□□□□ -0.71
MSH5O43196 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC10.6□□□□□ -0.71
MSH5O43196 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC10.6□□□□□ -0.71
MSH5O43196 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC10.6□□□□□ -0.71
MSH5O43196 AC002310.3-201ENST00000569728 723 ntBASIC10.6□□□□□ -0.71
MSH5O43196 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC10.6□□□□□ -0.71
MSH5O43196 AC060766.2-201ENST00000588235 334 ntBASIC10.6□□□□□ -0.71
MSH5O43196 NPIPB1P-202ENST00000588786 828 ntBASIC10.6□□□□□ -0.71
MSH5O43196 AL590099.1-201ENST00000615276 138 ntBASIC10.6□□□□□ -0.71
MSH5O43196 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
MSH5O43196 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
MSH5O43196 COL6A6-201ENST00000358511 9581 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
MSH5O43196 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
MSH5O43196 DNAH11-202ENST00000409508 14167 ntAPPRIS P2 TSL 5 BASIC10.6□□□□□ -0.71
MSH5O43196 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
MSH5O43196 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC10.6□□□□□ -0.71
MSH5O43196 KDM4C-205ENST00000428870 3039 ntTSL 2 BASIC10.6□□□□□ -0.71
MSH5O43196 AP000756.2-201ENST00000624168 2567 ntBASIC10.6□□□□□ -0.71
MSH5O43196 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
MSH5O43196 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC10.59□□□□□ -0.71
MSH5O43196 PARP4-201ENST00000381989 5474 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
MSH5O43196 KAT14-206ENST00000489634 3152 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
MSH5O43196 MFSD8-217ENST00000641178 4374 ntBASIC10.59□□□□□ -0.71
MSH5O43196 NPL-212ENST00000614468 2376 ntTSL 5 BASIC10.59□□□□□ -0.71
MSH5O43196 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
MSH5O43196 UBN2-201ENST00000473989 14444 ntAPPRIS P1 TSL 2 BASIC10.59□□□□□ -0.71
MSH5O43196 AC007842.1-201ENST00000597336 2039 ntBASIC10.59□□□□□ -0.71
MSH5O43196 U3.6-201ENST00000363622 211 ntBASIC10.59□□□□□ -0.71
MSH5O43196 Y_RNA.346-201ENST00000365385 112 ntBASIC10.59□□□□□ -0.71
MSH5O43196 PDHA1-202ENST00000379804 709 ntTSL 2 BASIC10.59□□□□□ -0.71
MSH5O43196 LINC00851-201ENST00000423033 727 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
MSH5O43196 MED15P9-201ENST00000424716 533 ntBASIC10.59□□□□□ -0.71
MSH5O43196 LINC02088-201ENST00000428134 620 ntTSL 3 BASIC10.59□□□□□ -0.71
MSH5O43196 CD59-206ENST00000445143 825 ntAPPRIS P2 TSL 3 BASIC10.59□□□□□ -0.71
MSH5O43196 AL161636.2-201ENST00000445179 927 ntBASIC10.59□□□□□ -0.71
MSH5O43196 LINC01007-203ENST00000451953 579 ntTSL 4 BASIC10.59□□□□□ -0.71
MSH5O43196 AC114300.1-201ENST00000502347 280 ntBASIC10.59□□□□□ -0.71
MSH5O43196 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC10.59□□□□□ -0.71
MSH5O43196 RNU6-1007P-201ENST00000516586 107 ntBASIC10.59□□□□□ -0.71
MSH5O43196 PCED1B-AS1-207ENST00000551432 522 ntTSL 5 BASIC10.59□□□□□ -0.71
MSH5O43196 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC10.59□□□□□ -0.71
MSH5O43196 MIR5692A1-201ENST00000580523 69 ntBASIC10.59□□□□□ -0.71
MSH5O43196 AC244100.4-201ENST00000617747 388 ntBASIC10.59□□□□□ -0.71
MSH5O43196 AC007998.5-201ENST00000622938 237 ntBASIC10.59□□□□□ -0.71
MSH5O43196 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
MSH5O43196 CEACAM20-205ENST00000620096 1494 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
MSH5O43196 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
MSH5O43196 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC10.59□□□□□ -0.71
MSH5O43196 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC10.59□□□□□ -0.71
MSH5O43196 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC10.59□□□□□ -0.71
MSH5O43196 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
MSH5O43196 COPG1-201ENST00000314797 3078 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
MSH5O43196 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.71
MSH5O43196 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
MSH5O43196 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
MSH5O43196 AC010894.3-201ENST00000442996 2400 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
MSH5O43196 SULT1C2-202ENST00000326853 2828 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
MSH5O43196 PPFIA2-204ENST00000541017 4192 ntTSL 2 BASIC10.58□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms