Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 RNA5SP73-201ENST00000516744 108 ntBASIC4.35□□□□□ -1.71
VCPP55072 IGHV3-32-201ENST00000519182 355 ntBASIC4.35□□□□□ -1.71
VCPP55072 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.35□□□□□ -1.71
VCPP55072 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.35□□□□□ -1.71
VCPP55072 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.35□□□□□ -1.71
VCPP55072 AC007424.1-203ENST00000554613 687 ntBASIC4.35□□□□□ -1.71
VCPP55072 AL161713.1-201ENST00000555538 145 ntBASIC4.35□□□□□ -1.71
VCPP55072 AC120057.2-201ENST00000571520 271 ntBASIC4.35□□□□□ -1.71
VCPP55072 AC022655.2-201ENST00000577280 318 ntBASIC4.35□□□□□ -1.71
VCPP55072 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC4.35□□□□□ -1.71
VCPP55072 NF1P5-201ENST00000588287 448 ntBASIC4.35□□□□□ -1.71
VCPP55072 MTCO3P22-201ENST00000603219 784 ntBASIC4.35□□□□□ -1.71
VCPP55072 OR4H6P-202ENST00000603819 340 ntBASIC4.35□□□□□ -1.71
VCPP55072 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.35□□□□□ -1.71
VCPP55072 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VCPP55072 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.35□□□□□ -1.71
VCPP55072 AL354798.1-201ENST00000622505 329 ntBASIC4.35□□□□□ -1.71
VCPP55072 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.35□□□□□ -1.71
VCPP55072 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VCPP55072 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VCPP55072 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VCPP55072 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.35□□□□□ -1.71
VCPP55072 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VCPP55072 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.34□□□□□ -1.71
VCPP55072 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
VCPP55072 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VCPP55072 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.34□□□□□ -1.71
VCPP55072 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VCPP55072 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
VCPP55072 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.34□□□□□ -1.71
VCPP55072 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VCPP55072 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.71
VCPP55072 SNORD115-48-201ENST00000364764 76 ntBASIC4.34□□□□□ -1.71
VCPP55072 USP9YP19-201ENST00000412165 485 ntBASIC4.34□□□□□ -1.71
VCPP55072 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VCPP55072 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VCPP55072 AC115285.1-201ENST00000424879 736 ntBASIC4.34□□□□□ -1.71
VCPP55072 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.34□□□□□ -1.71
VCPP55072 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.34□□□□□ -1.71
VCPP55072 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.34□□□□□ -1.71
VCPP55072 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VCPP55072 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.34□□□□□ -1.71
VCPP55072 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.34□□□□□ -1.71
VCPP55072 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VCPP55072 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.34□□□□□ -1.71
VCPP55072 NFU1-207ENST00000462320 558 ntTSL 4 BASIC4.34□□□□□ -1.71
VCPP55072 OR9N1P-202ENST00000494289 481 ntBASIC4.34□□□□□ -1.71
VCPP55072 SUMO1P1-201ENST00000497904 306 ntBASIC4.34□□□□□ -1.71
VCPP55072 CAB39P1-201ENST00000502277 460 ntBASIC4.34□□□□□ -1.71
VCPP55072 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.34□□□□□ -1.71
VCPP55072 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.34□□□□□ -1.71
VCPP55072 SETP12-201ENST00000514068 805 ntBASIC4.34□□□□□ -1.71
VCPP55072 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.34□□□□□ -1.71
VCPP55072 RNU6-1004P-201ENST00000516584 111 ntBASIC4.34□□□□□ -1.71
VCPP55072 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.34□□□□□ -1.71
VCPP55072 AC022790.1-201ENST00000522872 204 ntBASIC4.34□□□□□ -1.71
VCPP55072 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.34□□□□□ -1.71
VCPP55072 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.34□□□□□ -1.71
VCPP55072 CKS1BP1-201ENST00000555221 240 ntBASIC4.34□□□□□ -1.71
VCPP55072 LINC00557-201ENST00000563184 1279 ntBASIC4.34□□□□□ -1.71
VCPP55072 AC005412.1-201ENST00000580812 1049 ntBASIC4.34□□□□□ -1.71
VCPP55072 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.34□□□□□ -1.71
VCPP55072 AC015967.1-201ENST00000619893 476 ntBASIC4.34□□□□□ -1.71
VCPP55072 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC4.34□□□□□ -1.71
VCPP55072 AL034408.1-202ENST00000636088 415 ntBASIC4.34□□□□□ -1.71
VCPP55072 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VCPP55072 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.34□□□□□ -1.71
VCPP55072 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VCPP55072 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
VCPP55072 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
VCPP55072 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.72
VCPP55072 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.33□□□□□ -1.72
VCPP55072 ZNF962P-201ENST00000443465 3140 ntBASIC4.33□□□□□ -1.72
VCPP55072 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.33□□□□□ -1.72
VCPP55072 Z82217.1-201ENST00000625157 8149 ntBASIC4.33□□□□□ -1.72
VCPP55072 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VCPP55072 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VCPP55072 RNF6P1-201ENST00000444889 1784 ntBASIC4.33□□□□□ -1.72
VCPP55072 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
VCPP55072 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.33□□□□□ -1.72
VCPP55072 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VCPP55072 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.33□□□□□ -1.72
VCPP55072 RNA5SP306-201ENST00000411087 107 ntBASIC4.33□□□□□ -1.72
VCPP55072 MTND4P24-201ENST00000424002 397 ntBASIC4.33□□□□□ -1.72
VCPP55072 YWHAEP5-201ENST00000431545 765 ntBASIC4.33□□□□□ -1.72
VCPP55072 ZNF965P-201ENST00000432501 817 ntBASIC4.33□□□□□ -1.72
VCPP55072 MTND4P15-201ENST00000437913 1033 ntBASIC4.33□□□□□ -1.72
VCPP55072 CYCSP32-201ENST00000440548 321 ntBASIC4.33□□□□□ -1.72
VCPP55072 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.33□□□□□ -1.72
VCPP55072 PRDX3P3-201ENST00000447765 522 ntBASIC4.33□□□□□ -1.72
VCPP55072 PDSS1P2-201ENST00000449397 678 ntBASIC4.33□□□□□ -1.72
VCPP55072 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.33□□□□□ -1.72
VCPP55072 AC139783.2-201ENST00000504847 1145 ntBASIC4.33□□□□□ -1.72
VCPP55072 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.33□□□□□ -1.72
VCPP55072 AC074250.1-201ENST00000511117 192 ntBASIC4.33□□□□□ -1.72
VCPP55072 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.33□□□□□ -1.72
VCPP55072 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.33□□□□□ -1.72
VCPP55072 OR8K2P-201ENST00000524645 927 ntBASIC4.33□□□□□ -1.72
VCPP55072 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.72
VCPP55072 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms