Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC5.35□□□□□ -1.55
SMARCA1P28370 CR383656.6-201ENST00000550518 394 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AC079075.1-201ENST00000559543 878 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AC015912.2-201ENST00000571053 181 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AC110743.1-201ENST00000584870 478 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 VN1R90P-201ENST00000595717 726 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AP003973.1-201ENST00000604639 691 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AC105129.3-201ENST00000605455 485 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.35□□□□□ -1.55
SMARCA1P28370 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
SMARCA1P28370 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AL136164.3-201ENST00000624429 3978 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SMARCA1P28370 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.35□□□□□ -1.55
SMARCA1P28370 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.34□□□□□ -1.55
SMARCA1P28370 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
SMARCA1P28370 ASNSP1-204ENST00000641977 1664 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SMARCA1P28370 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SMARCA1P28370 OR56B2P-202ENST00000641377 2453 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SMARCA1P28370 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SMARCA1P28370 AC021146.4-201ENST00000309229 279 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SMARCA1P28370 RNU6-553P-201ENST00000364047 96 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 SNORA71.2-201ENST00000364941 134 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SMARCA1P28370 MIR921-201ENST00000401133 56 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 RNU2-65P-201ENST00000410162 185 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.34□□□□□ -1.55
SMARCA1P28370 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC5.34□□□□□ -1.55
SMARCA1P28370 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC5.34□□□□□ -1.55
SMARCA1P28370 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC5.34□□□□□ -1.55
SMARCA1P28370 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.34□□□□□ -1.55
SMARCA1P28370 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC5.34□□□□□ -1.55
SMARCA1P28370 CCDC75P1-201ENST00000469247 791 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SMARCA1P28370 NAA50-206ENST00000493454 964 ntTSL 2 BASIC5.34□□□□□ -1.55
SMARCA1P28370 AC010587.2-201ENST00000511727 448 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.34□□□□□ -1.55
SMARCA1P28370 SMARCE1P4-201ENST00000523647 241 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.34□□□□□ -1.55
SMARCA1P28370 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.34□□□□□ -1.55
SMARCA1P28370 VN1R82P-201ENST00000601481 356 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 AC010738.1-201ENST00000604970 987 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC5.34□□□□□ -1.55
SMARCA1P28370 AC019193.2-201ENST00000610012 634 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 AC122133.1-201ENST00000613964 233 ntBASIC5.34□□□□□ -1.55
SMARCA1P28370 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SMARCA1P28370 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
SMARCA1P28370 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC5.34□□□□□ -1.55
SMARCA1P28370 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.34□□□□□ -1.55
SMARCA1P28370 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC5.34□□□□□ -1.55
SMARCA1P28370 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SMARCA1P28370 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.34□□□□□ -1.55
SMARCA1P28370 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.34□□□□□ -1.56
SMARCA1P28370 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.34□□□□□ -1.56
SMARCA1P28370 AL592182.3-201ENST00000642132 3304 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.33□□□□□ -1.56
SMARCA1P28370 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SMARCA1P28370 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC5.33□□□□□ -1.56
SMARCA1P28370 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SMARCA1P28370 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SMARCA1P28370 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SMARCA1P28370 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.33□□□□□ -1.56
SMARCA1P28370 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SMARCA1P28370 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC5.33□□□□□ -1.56
SMARCA1P28370 RNU6-839P-201ENST00000363347 108 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC5.33□□□□□ -1.56
SMARCA1P28370 AC019155.1-201ENST00000382242 574 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 AL161909.1-201ENST00000397390 712 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 EIF4A1P3-201ENST00000411521 244 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SMARCA1P28370 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.33□□□□□ -1.56
SMARCA1P28370 P2RY10P2-201ENST00000416730 913 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.33□□□□□ -1.56
SMARCA1P28370 ZNF885P-201ENST00000420174 1098 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC5.33□□□□□ -1.56
SMARCA1P28370 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.33□□□□□ -1.56
SMARCA1P28370 MTCO2P25-201ENST00000447065 681 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 AC239809.1-201ENST00000450470 217 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 RPS29P33-201ENST00000456717 146 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 AL445433.1-201ENST00000457507 257 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 RAP1BP2-201ENST00000478270 544 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC5.33□□□□□ -1.56
SMARCA1P28370 AC011352.3-201ENST00000505162 593 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 HSPE1P23-201ENST00000509838 286 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 AC048346.1-201ENST00000510247 144 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 RNU6-1225P-201ENST00000516336 65 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC5.33□□□□□ -1.56
SMARCA1P28370 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC5.33□□□□□ -1.56
SMARCA1P28370 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.33□□□□□ -1.56
SMARCA1P28370 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms