Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 ARL4AP3-201ENST00000441452 574 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 FABP3P2-201ENST00000453169 399 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 RNA5SP103-201ENST00000459503 118 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC096992.1-201ENST00000459808 709 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC008379.1-201ENST00000463655 464 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AP000942.1-201ENST00000463969 747 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 RN7SL323P-201ENST00000494712 295 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 RNU6-334P-201ENST00000517072 102 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 RNA5SP179-201ENST00000517284 121 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 TRMT10BP1-201ENST00000519377 943 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 MTND1P6-201ENST00000523621 946 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC090819.1-201ENST00000523800 1111 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC100770.1-201ENST00000532310 322 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC068993.1-201ENST00000546724 589 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
TNFRSF4P43489 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 ABI1P1-201ENST00000603375 1120 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AL451044.1-201ENST00000604867 238 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 VN1R9P-201ENST00000614184 867 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC006213.4-201ENST00000616184 634 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC000123.2-201ENST00000623124 461 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC017104.5-201ENST00000637647 639 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 MAPK10-372ENST00000641954 3413 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TNFRSF4P43489 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TNFRSF4P43489 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
TNFRSF4P43489 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 Z73965.1-201ENST00000623412 2297 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
TNFRSF4P43489 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 RNA5SP97-201ENST00000365006 84 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 AP002784.2-201ENST00000397300 549 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 VN1R8P-201ENST00000407739 893 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 RN7SKP156-201ENST00000410308 342 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC006946.1-201ENST00000429106 328 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 RPL37P1-201ENST00000432310 284 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC105402.2-201ENST00000438503 358 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC092170.1-201ENST00000440211 356 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC092809.1-201ENST00000441469 474 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC139103.1-201ENST00000534696 1030 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC124283.4-201ENST00000581815 456 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 AC091167.4-201ENST00000605079 184 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 AL121772.2-201ENST00000614331 297 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 FP236240.3-201ENST00000623061 327 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 LINC01109-201ENST00000603837 3081 ntBASIC4.06□□□□□ -1.76
TNFRSF4P43489 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
TNFRSF4P43489 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.06□□□□□ -1.76
TNFRSF4P43489 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
TNFRSF4P43489 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.05□□□□□ -1.76
TNFRSF4P43489 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
TNFRSF4P43489 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
TNFRSF4P43489 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
TNFRSF4P43489 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
TNFRSF4P43489 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.05□□□□□ -1.76
TNFRSF4P43489 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.05□□□□□ -1.76
TNFRSF4P43489 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.05□□□□□ -1.76
TNFRSF4P43489 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
TNFRSF4P43489 OR4A15-201ENST00000314706 1035 ntBASIC4.05□□□□□ -1.76
TNFRSF4P43489 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.05□□□□□ -1.76
TNFRSF4P43489 MIR23A-201ENST00000385245 73 ntBASIC4.05□□□□□ -1.76
TNFRSF4P43489 RNA5SP372-201ENST00000390836 115 ntBASIC4.05□□□□□ -1.76
TNFRSF4P43489 RNA5SP44-201ENST00000410446 133 ntBASIC4.05□□□□□ -1.76
TNFRSF4P43489 RAB9AP3-201ENST00000412737 573 ntBASIC4.05□□□□□ -1.76
TNFRSF4P43489 PGBD4P8-201ENST00000412993 562 ntBASIC4.05□□□□□ -1.76
TNFRSF4P43489 AC004022.2-201ENST00000413824 193 ntBASIC4.05□□□□□ -1.76
TNFRSF4P43489 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC4.05□□□□□ -1.76
TNFRSF4P43489 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC4.05□□□□□ -1.76
TNFRSF4P43489 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
TNFRSF4P43489 MTCO2P1-201ENST00000424648 477 ntBASIC4.05□□□□□ -1.76
TNFRSF4P43489 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
TNFRSF4P43489 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.05□□□□□ -1.76
TNFRSF4P43489 RPS26P40-201ENST00000435209 294 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 154.7 ms