Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.4□□□□□ -1.7
COL18A1P39060 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.4□□□□□ -1.7
COL18A1P39060 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.4□□□□□ -1.7
COL18A1P39060 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.4□□□□□ -1.7
COL18A1P39060 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.4□□□□□ -1.7
COL18A1P39060 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL18A1P39060 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL18A1P39060 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.4□□□□□ -1.71
COL18A1P39060 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL18A1P39060 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.4□□□□□ -1.71
COL18A1P39060 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
COL18A1P39060 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC4.4□□□□□ -1.71
COL18A1P39060 RNA5SP80-201ENST00000410475 111 ntBASIC4.4□□□□□ -1.71
COL18A1P39060 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.4□□□□□ -1.71
COL18A1P39060 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL18A1P39060 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.4□□□□□ -1.71
COL18A1P39060 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.4□□□□□ -1.71
COL18A1P39060 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.4□□□□□ -1.71
COL18A1P39060 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.4□□□□□ -1.71
COL18A1P39060 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.4□□□□□ -1.71
COL18A1P39060 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.4□□□□□ -1.71
COL18A1P39060 AL158062.1-201ENST00000619632 745 ntBASIC4.4□□□□□ -1.71
COL18A1P39060 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL18A1P39060 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.39□□□□□ -1.71
COL18A1P39060 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.39□□□□□ -1.71
COL18A1P39060 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.39□□□□□ -1.71
COL18A1P39060 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.39□□□□□ -1.71
COL18A1P39060 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL18A1P39060 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL18A1P39060 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL18A1P39060 AC073073.2-201ENST00000609827 2578 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.39□□□□□ -1.71
COL18A1P39060 JKAMPP1-201ENST00000413804 919 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 AL353678.1-201ENST00000422735 741 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.39□□□□□ -1.71
COL18A1P39060 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.39□□□□□ -1.71
COL18A1P39060 AF228730.2-201ENST00000438784 848 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 AC000041.1-201ENST00000439655 175 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 AC022795.1-201ENST00000473808 480 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 RPS29P26-201ENST00000477483 171 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 RPS3AP43-201ENST00000479743 781 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 FCF1P3-201ENST00000496394 590 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.39□□□□□ -1.71
COL18A1P39060 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.39□□□□□ -1.71
COL18A1P39060 HIGD1AP3-201ENST00000515857 278 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.39□□□□□ -1.71
COL18A1P39060 PSMA2P1-201ENST00000526365 646 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 BRDTP1-201ENST00000605735 677 ntBASIC4.39□□□□□ -1.71
COL18A1P39060 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL18A1P39060 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL18A1P39060 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.39□□□□□ -1.71
COL18A1P39060 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC4.39□□□□□ -1.71
COL18A1P39060 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL18A1P39060 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL18A1P39060 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.38□□□□□ -1.71
COL18A1P39060 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.38□□□□□ -1.71
COL18A1P39060 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL18A1P39060 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
COL18A1P39060 AL139095.1-201ENST00000404326 391 ntBASIC4.38□□□□□ -1.71
COL18A1P39060 HSPE1P8-201ENST00000406997 288 ntBASIC4.38□□□□□ -1.71
COL18A1P39060 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.38□□□□□ -1.71
COL18A1P39060 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.38□□□□□ -1.71
COL18A1P39060 OR51C1P-201ENST00000608504 942 ntBASIC4.38□□□□□ -1.71
COL18A1P39060 MIR486-1-201ENST00000612171 68 ntBASIC4.38□□□□□ -1.71
COL18A1P39060 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL18A1P39060 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
COL18A1P39060 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL18A1P39060 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL18A1P39060 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.38□□□□□ -1.71
COL18A1P39060 CR383658.2-201ENST00000547576 1525 ntBASIC4.38□□□□□ -1.71
COL18A1P39060 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL18A1P39060 AC006504.1-201ENST00000562493 3666 ntBASIC4.38□□□□□ -1.71
COL18A1P39060 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
COL18A1P39060 AL645568.2-201ENST00000432815 1337 ntBASIC4.38□□□□□ -1.71
COL18A1P39060 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
COL18A1P39060 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL18A1P39060 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL18A1P39060 RNU6-283P-201ENST00000364788 107 ntBASIC4.37□□□□□ -1.71
COL18A1P39060 MRPS18BP2-201ENST00000434310 759 ntBASIC4.37□□□□□ -1.71
COL18A1P39060 AL356535.1-201ENST00000440335 398 ntBASIC4.37□□□□□ -1.71
COL18A1P39060 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.37□□□□□ -1.71
COL18A1P39060 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC4.37□□□□□ -1.71
COL18A1P39060 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.37□□□□□ -1.71
COL18A1P39060 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.37□□□□□ -1.71
COL18A1P39060 AC006557.5-201ENST00000603126 811 ntBASIC4.37□□□□□ -1.71
COL18A1P39060 AL139395.1-201ENST00000603662 160 ntBASIC4.37□□□□□ -1.71
COL18A1P39060 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.37□□□□□ -1.71
COL18A1P39060 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.37□□□□□ -1.71
COL18A1P39060 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
COL18A1P39060 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.37□□□□□ -1.71
COL18A1P39060 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.37□□□□□ -1.71
COL18A1P39060 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
COL18A1P39060 AC006989.1-201ENST00000427212 131 ntBASIC4.37□□□□□ -1.71
COL18A1P39060 AC006518.1-201ENST00000541449 943 ntBASIC4.37□□□□□ -1.71
COL18A1P39060 AC087888.1-201ENST00000550884 1254 ntBASIC4.37□□□□□ -1.71
COL18A1P39060 HMGN2P47-201ENST00000559378 272 ntBASIC4.37□□□□□ -1.71
COL18A1P39060 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.37□□□□□ -1.71
COL18A1P39060 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
COL18A1P39060 SAGE4P-201ENST00000442271 3381 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms