Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC093815.1-201ENST00000508637 280 ntBASIC3.43□□□□□ -1.86
VCANP13611 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.43□□□□□ -1.86
VCANP13611 AC006946.3-201ENST00000609791 756 ntBASIC3.43□□□□□ -1.86
VCANP13611 AP004607.9-201ENST00000618202 316 ntBASIC3.43□□□□□ -1.86
VCANP13611 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
VCANP13611 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VCANP13611 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.43□□□□□ -1.86
VCANP13611 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VCANP13611 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VCANP13611 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.42□□□□□ -1.86
VCANP13611 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
VCANP13611 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VCANP13611 HCG17-214ENST00000453558 732 ntTSL 5 BASIC3.42□□□□□ -1.86
VCANP13611 OR11H5P-201ENST00000554039 926 ntBASIC3.42□□□□□ -1.86
VCANP13611 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.42□□□□□ -1.86
VCANP13611 AC124856.1-201ENST00000600819 896 ntBASIC3.42□□□□□ -1.86
VCANP13611 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VCANP13611 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.42□□□□□ -1.86
VCANP13611 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.42□□□□□ -1.86
VCANP13611 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VCANP13611 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC3.42□□□□□ -1.86
VCANP13611 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VCANP13611 Y_RNA.164-201ENST00000363709 102 ntBASIC3.42□□□□□ -1.86
VCANP13611 AL031584.1-201ENST00000447169 754 ntBASIC3.42□□□□□ -1.86
VCANP13611 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.42□□□□□ -1.86
VCANP13611 AL133247.2-201ENST00000603236 482 ntBASIC3.42□□□□□ -1.86
VCANP13611 NAMPTP1-201ENST00000440465 2514 ntBASIC3.42□□□□□ -1.86
VCANP13611 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
VCANP13611 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VCANP13611 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
VCANP13611 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VCANP13611 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VCANP13611 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
VCANP13611 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.42□□□□□ -1.86
VCANP13611 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VCANP13611 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VCANP13611 AC117434.1-201ENST00000419971 836 ntBASIC3.42□□□□□ -1.86
VCANP13611 CKS1BP2-201ENST00000497342 240 ntBASIC3.42□□□□□ -1.86
VCANP13611 RNU6-579P-201ENST00000516879 102 ntBASIC3.42□□□□□ -1.86
VCANP13611 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC3.42□□□□□ -1.86
VCANP13611 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.42□□□□□ -1.86
VCANP13611 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC3.41□□□□□ -1.86
VCANP13611 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
VCANP13611 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.41□□□□□ -1.86
VCANP13611 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.41□□□□□ -1.86
VCANP13611 OR4A12P-201ENST00000530847 918 ntBASIC3.41□□□□□ -1.86
VCANP13611 HIGD1AP1-201ENST00000550979 275 ntBASIC3.41□□□□□ -1.86
VCANP13611 AL359219.2-201ENST00000555184 348 ntBASIC3.41□□□□□ -1.86
VCANP13611 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.41□□□□□ -1.86
VCANP13611 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.41□□□□□ -1.86
VCANP13611 MIR2682-201ENST00000580305 110 ntBASIC3.41□□□□□ -1.86
VCANP13611 AL031658.2-201ENST00000616850 651 ntBASIC3.41□□□□□ -1.86
VCANP13611 AL356274.1-201ENST00000617064 410 ntBASIC3.41□□□□□ -1.86
VCANP13611 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VCANP13611 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.41□□□□□ -1.86
VCANP13611 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC3.41□□□□□ -1.86
VCANP13611 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
VCANP13611 AC124916.1-201ENST00000444020 547 ntBASIC3.41□□□□□ -1.86
VCANP13611 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC3.41□□□□□ -1.86
VCANP13611 KCTD9P6-201ENST00000522306 950 ntBASIC3.41□□□□□ -1.86
VCANP13611 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.41□□□□□ -1.86
VCANP13611 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
VCANP13611 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC3.41□□□□□ -1.86
VCANP13611 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VCANP13611 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC3.4□□□□□ -1.86
VCANP13611 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.4□□□□□ -1.86
VCANP13611 DDX6P1-205ENST00000441966 1436 ntBASIC3.4□□□□□ -1.86
VCANP13611 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.4□□□□□ -1.86
VCANP13611 AC044913.1-201ENST00000557200 430 ntBASIC3.4□□□□□ -1.86
VCANP13611 SLC25A36P1-201ENST00000590111 465 ntBASIC3.4□□□□□ -1.86
VCANP13611 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.4□□□□□ -1.86
VCANP13611 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VCANP13611 AC010655.1-201ENST00000449336 292 ntBASIC3.4□□□□□ -1.87
VCANP13611 AC009097.3-201ENST00000563557 1018 ntBASIC3.4□□□□□ -1.87
VCANP13611 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.4□□□□□ -1.87
VCANP13611 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC3.4□□□□□ -1.87
VCANP13611 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
VCANP13611 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.4□□□□□ -1.87
VCANP13611 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC3.4□□□□□ -1.87
VCANP13611 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC3.4□□□□□ -1.87
VCANP13611 RNU1-15P-201ENST00000353977 144 ntBASIC3.4□□□□□ -1.87
VCANP13611 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.4□□□□□ -1.87
VCANP13611 AC090602.1-201ENST00000469695 252 ntBASIC3.4□□□□□ -1.87
VCANP13611 AC112198.1-201ENST00000505369 1220 ntBASIC3.4□□□□□ -1.87
VCANP13611 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.4□□□□□ -1.87
VCANP13611 AC078814.3-201ENST00000553036 491 ntBASIC3.4□□□□□ -1.87
VCANP13611 AP001004.1-201ENST00000582468 324 ntBASIC3.4□□□□□ -1.87
VCANP13611 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.4□□□□□ -1.87
VCANP13611 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.4□□□□□ -1.87
VCANP13611 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VCANP13611 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VCANP13611 AL049780.3-201ENST00000624612 1583 ntBASIC3.39□□□□□ -1.87
VCANP13611 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC3.39□□□□□ -1.87
VCANP13611 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VCANP13611 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC3.39□□□□□ -1.87
VCANP13611 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VCANP13611 Y_RNA.355-201ENST00000365462 98 ntBASIC3.39□□□□□ -1.87
VCANP13611 AC112184.1-201ENST00000505179 312 ntBASIC3.39□□□□□ -1.87
VCANP13611 RNA5SP458-201ENST00000516188 119 ntBASIC3.39□□□□□ -1.87
VCANP13611 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms