Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MIR3936-201ENST00000584304 110 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC011487.3-201ENST00000593607 453 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC025165.5-201ENST00000602802 578 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 MEMO1P5-201ENST00000604810 406 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC092650.2-201ENST00000619984 902 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC120349.2-201ENST00000625002 298 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC099063.3-201ENST00000642066 185 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC000374.1-201ENST00000434698 1745 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 LINC00561-201ENST00000565815 2738 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 UBBP2-201ENST00000376781 231 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 MIR92A2-201ENST00000385299 75 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 MT-TH-201ENST00000387441 69 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 ATP5F1P4-201ENST00000397288 746 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 MIR1284-201ENST00000408337 120 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 NPM1P11-201ENST00000417106 855 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC009237.2-201ENST00000421358 284 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 MTCO3P1-205ENST00000422088 832 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AL360081.1-201ENST00000428299 555 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 IFNNP1-201ENST00000429219 553 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AL049745.1-201ENST00000433953 286 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 B3GNT2P1-201ENST00000434960 952 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC092013.1-201ENST00000438795 332 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 NPM1P33-201ENST00000438918 872 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 ELOCP10-201ENST00000440624 327 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 NDUFA5P7-201ENST00000452914 242 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 RN7SL591P-201ENST00000496150 292 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC140172.1-201ENST00000502928 141 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 MTND4P2-201ENST00000507767 1203 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 HMGB1P28-201ENST00000507778 552 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 LTV1P1-201ENST00000510683 1237 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 MTCO2P32-201ENST00000514865 403 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 RPL12P22-201ENST00000519073 490 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 OR7K1P-201ENST00000546439 926 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC005951.1-201ENST00000576706 485 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC011260.1-201ENST00000578420 472 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 ELOCP34-201ENST00000604436 327 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC104687.2-201ENST00000604442 342 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 RN7SKP299-201ENST00000606679 301 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AC013562.2-201ENST00000611632 603 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AL049794.2-201ENST00000616301 365 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 AL022393.1-201ENST00000625142 1677 ntBASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PTCHD3Q3KNS1 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 NCSTNP1-201ENST00000406229 144 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AL136133.1-201ENST00000413694 376 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AC012519.1-201ENST00000424588 610 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 MED14P1-201ENST00000430517 648 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 KCTD10P1-201ENST00000434203 625 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 PRPF38AP2-201ENST00000438179 851 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms