Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 RNU6-839P-201ENST00000363347 108 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 RNA5SP447-201ENST00000363749 119 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 Y_RNA.465-201ENST00000384293 102 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 U3.22-201ENST00000391120 215 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AL008987.1-201ENST00000415528 237 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 GTF2IP23-201ENST00000423746 351 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 RPL21P43-201ENST00000425440 472 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AC073587.1-201ENST00000447093 876 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 MTND2P14-201ENST00000482139 351 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AC025164.1-201ENST00000496249 478 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AC048346.1-201ENST00000510247 144 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 SNORA3.4-201ENST00000515969 96 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AF279873.1-201ENST00000523393 313 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 OR4A2P-201ENST00000527276 913 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 MRPS36P5-201ENST00000551909 298 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 NBEAP1-201ENST00000554452 979 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AL390816.3-201ENST00000604527 1066 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AC092954.1-201ENST00000609121 445 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AC097478.2-201ENST00000610572 514 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 TUSC7.1-201ENST00000610969 165 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AL121873.1-201ENST00000616013 524 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AL359757.1-201ENST00000623176 255 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AC124312.6-202ENST00000623624 418 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 AC079416.3-201ENST00000624479 549 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 MTND2P41-201ENST00000637599 773 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
BEST3Q8N1M1 OR56B2P-202ENST00000641377 2453 ntBASIC4.28□□□□□ -1.72
BEST3Q8N1M1 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.28□□□□□ -1.73
BEST3Q8N1M1 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.28□□□□□ -1.73
BEST3Q8N1M1 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 DBF4P1-201ENST00000412976 1892 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AC008549.2-201ENST00000333482 706 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 IL6STP1-201ENST00000346911 1020 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 MIR217-201ENST00000384817 110 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 SNORD65.1-201ENST00000390889 71 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AL049545.1-201ENST00000401856 572 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 ARL4AP5-201ENST00000404372 599 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AL450992.3-201ENST00000413192 568 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AL358176.3-201ENST00000420757 454 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 OFD1P2Y-201ENST00000421895 1149 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 EIF4HP2-201ENST00000424380 563 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 CKS1BP6-201ENST00000424932 240 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 NMNAT1P2-201ENST00000435192 860 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 COX7BP2-201ENST00000437976 242 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AC004938.1-201ENST00000438468 308 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AL589765.3-201ENST00000446084 462 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AL591363.1-201ENST00000450091 483 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 PNPLA4P1-201ENST00000458328 305 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AC026979.1-201ENST00000492525 396 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 RPL7L1P13-201ENST00000511702 739 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AC007016.1-201ENST00000512110 244 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 FABP5P12-201ENST00000515543 389 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AC084783.1-201ENST00000565846 910 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AC145350.1-201ENST00000567426 208 ntBASIC4.27□□□□□ -1.73
BEST3Q8N1M1 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms