Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.07□□□□□ -1.76
LMX1BO60663 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.07□□□□□ -1.76
LMX1BO60663 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.07□□□□□ -1.76
LMX1BO60663 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.07□□□□□ -1.76
LMX1BO60663 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.07□□□□□ -1.76
LMX1BO60663 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
LMX1BO60663 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC4.07□□□□□ -1.76
LMX1BO60663 AC027104.1-201ENST00000563702 681 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.07□□□□□ -1.76
LMX1BO60663 MIR4277-201ENST00000578298 84 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.07□□□□□ -1.76
LMX1BO60663 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 AC093765.1-201ENST00000603758 881 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
LMX1BO60663 AC105227.2-201ENST00000615075 605 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 MIR6853-201ENST00000619642 74 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 U6.107-201ENST00000637108 79 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LMX1BO60663 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.07□□□□□ -1.76
LMX1BO60663 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LMX1BO60663 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
LMX1BO60663 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
LMX1BO60663 AC138393.1-206ENST00000540997 1886 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LMX1BO60663 AL355852.1-201ENST00000454081 1771 ntBASIC4.07□□□□□ -1.76
LMX1BO60663 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.07□□□□□ -1.76
LMX1BO60663 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
LMX1BO60663 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
LMX1BO60663 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
LMX1BO60663 NCLP2-201ENST00000416078 1462 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.06□□□□□ -1.76
LMX1BO60663 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LMX1BO60663 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
LMX1BO60663 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
LMX1BO60663 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LMX1BO60663 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LMX1BO60663 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 FAM3C2-201ENST00000312214 681 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
LMX1BO60663 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
LMX1BO60663 NACA3P-201ENST00000359690 648 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 RNU6-553P-201ENST00000364047 96 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 RN7SKP227-201ENST00000364445 330 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 RNU4-31P-201ENST00000384211 141 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AC093719.1-202ENST00000392735 373 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.06□□□□□ -1.76
LMX1BO60663 RN7SKP106-201ENST00000410832 272 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.06□□□□□ -1.76
LMX1BO60663 AC019178.2-201ENST00000423595 505 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.06□□□□□ -1.76
LMX1BO60663 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.06□□□□□ -1.76
LMX1BO60663 YWHAZP7-201ENST00000436906 631 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 MTCO2P16-201ENST00000436962 677 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AC005154.2-201ENST00000438110 379 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 MUPP-201ENST00000438111 566 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.06□□□□□ -1.76
LMX1BO60663 ELOCP8-201ENST00000439309 332 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 ELOCP15-201ENST00000442090 332 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.06□□□□□ -1.76
LMX1BO60663 MTND2P19-201ENST00000449129 1012 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.06□□□□□ -1.76
LMX1BO60663 AC104971.1-201ENST00000495117 578 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC4.06□□□□□ -1.76
LMX1BO60663 AL117351.2-201ENST00000513571 157 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
LMX1BO60663 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.06□□□□□ -1.76
LMX1BO60663 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.06□□□□□ -1.76
LMX1BO60663 AC007115.1-201ENST00000546853 234 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AC002400.1-201ENST00000569310 726 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC4.06□□□□□ -1.76
LMX1BO60663 MIR5708-201ENST00000579723 85 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 AC090616.2-202ENST00000584248 222 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AP000811.1-201ENST00000603803 651 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AC021749.1-201ENST00000604322 607 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.06□□□□□ -1.76
LMX1BO60663 HULC.1-201ENST00000612720 240 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 VN1R74P-201ENST00000613259 503 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 MFSD8-245ENST00000641743 948 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LMX1BO60663 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.06□□□□□ -1.76
LMX1BO60663 AL031119.1-201ENST00000404707 1879 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AL442639.1-201ENST00000625030 1899 ntBASIC4.06□□□□□ -1.76
LMX1BO60663 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
LMX1BO60663 CCT8P1-201ENST00000413611 1657 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms