Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRCA1P38398 ZNF807-201ENST00000328088 1707 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRCA1P38398 IL6STP1-201ENST00000346911 1020 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 SNORA80A-201ENST00000363922 136 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 RN7SKP199-201ENST00000410325 305 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 PTP4A1P1-201ENST00000420539 515 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 EIF4EP1-201ENST00000422311 642 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.35□□□□□ -1.71
BRCA1P38398 AC006480.1-201ENST00000449887 378 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
BRCA1P38398 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.35□□□□□ -1.71
BRCA1P38398 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.35□□□□□ -1.71
BRCA1P38398 AC005476.1-201ENST00000554427 397 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.35□□□□□ -1.71
BRCA1P38398 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.35□□□□□ -1.71
BRCA1P38398 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.35□□□□□ -1.71
BRCA1P38398 AC093732.2-201ENST00000607950 274 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
BRCA1P38398 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRCA1P38398 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRCA1P38398 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.35□□□□□ -1.71
BRCA1P38398 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRCA1P38398 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
BRCA1P38398 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRCA1P38398 TTC39DP-201ENST00000416781 1688 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
BRCA1P38398 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.35□□□□□ -1.71
BRCA1P38398 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC4.35□□□□□ -1.71
BRCA1P38398 AL136131.1-201ENST00000406079 803 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 FTLP19-201ENST00000433300 394 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 KCTD9P3-201ENST00000434597 1169 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 AC000041.1-201ENST00000439655 175 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 AC097262.1-201ENST00000452559 548 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.35□□□□□ -1.71
BRCA1P38398 KC877373.1-201ENST00000479066 408 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 TRBV8-1-201ENST00000481590 279 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 FTH1P24-201ENST00000503502 462 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.35□□□□□ -1.71
BRCA1P38398 AC090877.1-201ENST00000561418 344 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.35□□□□□ -1.71
BRCA1P38398 AC008638.3-201ENST00000603341 463 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 AL451049.1-201ENST00000608672 497 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.35□□□□□ -1.71
BRCA1P38398 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.35□□□□□ -1.71
BRCA1P38398 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.35□□□□□ -1.71
BRCA1P38398 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.34□□□□□ -1.71
BRCA1P38398 AC024341.1-201ENST00000526444 1552 ntBASIC4.34□□□□□ -1.71
BRCA1P38398 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC4.34□□□□□ -1.71
BRCA1P38398 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
BRCA1P38398 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
BRCA1P38398 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
BRCA1P38398 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC4.34□□□□□ -1.71
BRCA1P38398 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.34□□□□□ -1.71
BRCA1P38398 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.34□□□□□ -1.71
BRCA1P38398 AC013412.1-201ENST00000610687 192 ntBASIC4.34□□□□□ -1.71
BRCA1P38398 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.34□□□□□ -1.71
BRCA1P38398 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
BRCA1P38398 MFSD8-233ENST00000641482 4860 ntBASIC4.34□□□□□ -1.72
BRCA1P38398 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
BRCA1P38398 AC119744.1-201ENST00000454746 1715 ntBASIC4.33□□□□□ -1.72
BRCA1P38398 FRG1CP-201ENST00000358464 769 ntBASIC4.33□□□□□ -1.72
BRCA1P38398 SNORA44-201ENST00000384584 132 ntBASIC4.33□□□□□ -1.72
BRCA1P38398 AC073587.1-201ENST00000447093 876 ntBASIC4.33□□□□□ -1.72
BRCA1P38398 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.33□□□□□ -1.72
BRCA1P38398 SEPT7P3-201ENST00000455017 621 ntBASIC4.33□□□□□ -1.72
BRCA1P38398 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.33□□□□□ -1.72
BRCA1P38398 NPM1P29-201ENST00000483112 803 ntBASIC4.33□□□□□ -1.72
BRCA1P38398 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.33□□□□□ -1.72
BRCA1P38398 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.33□□□□□ -1.72
BRCA1P38398 AL121839.1-201ENST00000556233 1185 ntBASIC4.33□□□□□ -1.72
BRCA1P38398 RFC1-217ENST00000639695 867 ntTSL 5 BASIC4.33□□□□□ -1.72
BRCA1P38398 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.33□□□□□ -1.72
BRCA1P38398 AC010300.1-201ENST00000600671 5134 ntBASIC4.33□□□□□ -1.72
BRCA1P38398 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
BRCA1P38398 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
BRCA1P38398 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
BRCA1P38398 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
BRCA1P38398 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
BRCA1P38398 RNU1-18P-201ENST00000363062 164 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 COTL1P1-201ENST00000422309 375 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 AL160175.1-201ENST00000428124 247 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 ARL4AP3-201ENST00000441452 574 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC4.32□□□□□ -1.72
BRCA1P38398 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.32□□□□□ -1.72
BRCA1P38398 AC107021.2-201ENST00000567714 2095 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
BRCA1P38398 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
BRCA1P38398 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
BRCA1P38398 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
BRCA1P38398 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 AC092447.2-201ENST00000435487 669 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 U3.44-201ENST00000458938 192 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 HMGB1P21-201ENST00000502313 581 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.32□□□□□ -1.72
BRCA1P38398 MTND2P17-201ENST00000550281 688 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.32□□□□□ -1.72
BRCA1P38398 SETP1-201ENST00000556014 845 ntBASIC4.32□□□□□ -1.72
BRCA1P38398 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC4.32□□□□□ -1.72
BRCA1P38398 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms