Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 Six3os1_1.1-201ENST00000620900 87 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.84□□□□□ -1.47
COL8A1P27658 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.84□□□□□ -1.47
COL8A1P27658 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL8A1P27658 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL8A1P27658 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
COL8A1P27658 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC5.84□□□□□ -1.47
COL8A1P27658 AC005614.1-201ENST00000598952 3653 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 AC129502.1-201ENST00000623261 1654 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC5.84□□□□□ -1.47
COL8A1P27658 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL8A1P27658 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL8A1P27658 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.48
COL8A1P27658 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC5.84□□□□□ -1.48
COL8A1P27658 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
COL8A1P27658 AC092125.1-201ENST00000562568 1995 ntBASIC5.84□□□□□ -1.48
COL8A1P27658 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC5.84□□□□□ -1.48
COL8A1P27658 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.84□□□□□ -1.48
COL8A1P27658 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
COL8A1P27658 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL8A1P27658 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC5.83□□□□□ -1.48
COL8A1P27658 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
COL8A1P27658 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC5.83□□□□□ -1.48
COL8A1P27658 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC5.83□□□□□ -1.48
COL8A1P27658 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC5.83□□□□□ -1.48
COL8A1P27658 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC5.83□□□□□ -1.48
COL8A1P27658 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
COL8A1P27658 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 Y_RNA.222-201ENST00000364264 102 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 RNU6-115P-201ENST00000364310 107 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 Y_RNA.376-201ENST00000365638 108 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 Y_RNA.378-201ENST00000365652 113 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 RNU6-378P-201ENST00000384324 107 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 Y_RNA.518-201ENST00000384552 113 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 RNU1-149P-201ENST00000390870 161 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 RPL7P60-201ENST00000397636 735 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 PPIAP9-201ENST00000403866 498 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 AL391417.1-201ENST00000404100 426 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 MIR1303-201ENST00000408625 86 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 RNU2-36P-201ENST00000410361 191 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 RNU2-23P-201ENST00000410545 195 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 RPL34P19-201ENST00000415903 342 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC5.83□□□□□ -1.48
COL8A1P27658 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC5.83□□□□□ -1.48
COL8A1P27658 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC5.83□□□□□ -1.48
COL8A1P27658 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC5.83□□□□□ -1.48
COL8A1P27658 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC5.83□□□□□ -1.48
COL8A1P27658 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.83□□□□□ -1.48
COL8A1P27658 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.83□□□□□ -1.48
COL8A1P27658 VPS25P1-201ENST00000455691 508 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 HNRNPDLP3-201ENST00000456745 380 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.83□□□□□ -1.48
COL8A1P27658 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
COL8A1P27658 RPL7AP23-201ENST00000482625 776 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 RPS27P23-201ENST00000487608 251 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC5.83□□□□□ -1.48
COL8A1P27658 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 RNA5SP337-201ENST00000517007 109 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 AC090136.1-201ENST00000520009 240 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 AP001922.4-201ENST00000526967 290 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 AL137161.1-201ENST00000532231 390 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 BLID-201ENST00000560104 862 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
COL8A1P27658 HMGB2P1-201ENST00000591146 634 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 AL512329.2-201ENST00000607350 548 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 Z82243.1-201ENST00000609432 473 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 AC010378.1-201ENST00000619270 362 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.83□□□□□ -1.48
COL8A1P27658 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.83□□□□□ -1.48
COL8A1P27658 AL049767.1-202ENST00000637826 242 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 NT5C2-203ENST00000404739 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.83□□□□□ -1.48
COL8A1P27658 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
COL8A1P27658 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.83□□□□□ -1.48
COL8A1P27658 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC5.83□□□□□ -1.48
COL8A1P27658 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL8A1P27658 AC241584.2-201ENST00000637142 2090 ntBASIC5.83□□□□□ -1.48
COL8A1P27658 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
COL8A1P27658 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC5.82□□□□□ -1.48
COL8A1P27658 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL8A1P27658 AC010329.1-201ENST00000593903 8328 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms